Haley Stone is a Research Associate at the CRUISE Lab in the School of Computer Science and Engineering at UNSW. Her research focuses on epidemic modeling, machine learning, and computational biology, with interests spanning SEIR models, agent-based simulation, graph-based inference, and phylogenetics. She completed her PhD at the Kirby Institute, where she worked on pandemic preparedness and the integration of genomic and epidemiological data to model infectious disease dynamics.
Publications
Media
Grants
Awards
Research Activities
Engagement
Teaching and Supervision
Journal articles | 2025
Jindal M; Stone H; Lim S; MacIntyre CR, 2025, 'A Geospatial Perspective Toward the Role of Wild Bird Migrations and Global Poultry Trade in the Spread of Highly Pathogenic Avian Influenza H5N1', Geohealth, 9, http://dx.doi.org/10.1029/2024GH001296
Journal articles | 2025
Quigley A; Honeyman D; Stone H; Dawson R; Macintyre R, 2025, 'EPIWATCH, an artificial intelligence early-warning system as a valuable tool in outbreak surveillance', INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 152, pp. 57 - 58, http://dx.doi.org/10.1016/j.ijid.2024.107579
Journal articles | 2025
Quigley AL; Kunasekaran M; Stone H; Honeyman D; Notaras A; Lim S; MacIntyre R, 2025, 'The impact of the cruise ship Coral Princess on COVID-19 transmission in regional Western Australia in 2022', Journal of Travel Medicine, 32, http://dx.doi.org/10.1093/jtm/taae044
Journal articles | 2024
Hutchinson D; Li B; Lim S; Stone H; MacIntyre CR, 2024, 'Using EPIWATCH® open-source surveillance to describe the epidemiology of lumpy skin disease outbreaks in South and Southeast Asia (2022–2023)', Australian Veterinary Journal, 102, pp. 524 - 529, http://dx.doi.org/10.1111/avj.13362
Journal articles | 2023
Chen X; Kunasekaran MP; Hutchinson D; Stone H; Zhang T; Aagerup J; Moa A; MacIntyre CR, 2023, 'Enhanced EPIRISK tool for rapid epidemic risk analysis', Public Health, 224, pp. 159 - 168, http://dx.doi.org/10.1016/j.puhe.2023.08.032
Journal articles | 2023
Hutchinson D; Kunasekaran M; Stone H; Chen X; Quigley A; Moa A; Macintyre CR, 2023, 'Healthcare Workers' SARS-CoV-2 Infections in Four Hospital Outbreaks during Delta Variant Prevalence in Sydney, Australia', Nursing Research and Practice, 2023, pp. 1806909, http://dx.doi.org/10.1155/2023/1806909
Journal articles | 2023
MacIntyre CR; Chen X; Kunasekaran M; Quigley A; Lim S; Stone H; Paik HY; Yao L; Heslop D; Wei W; Sarmiento I; Gurdasani D, 2023, 'Artificial intelligence in public health: the potential of epidemic early warning systems', Journal of International Medical Research, 51, http://dx.doi.org/10.1177/03000605231159335
Journal articles | 2023
Stone H; Heslop D; Lim S; Sarmiento I; Kunasekaran M; Raina MacIntyre C, 2023, 'Open-Source Intelligence for Detection of Radiological Events and Syndromes Following the Invasion of Ukraine in 2022: Observational Study', Jmir Infodemiology, 3, http://dx.doi.org/10.2196/39895
Journal articles | 2023
Stone H; Notaras A; Chen R; Edgeworth J; Quigley A, 2023, 'Highly Pathogenic Avian Influenza (H5N1) in humans after the emergence of clade 2.3.4.4b in 2020', Global Biosecurity, 5, http://dx.doi.org/10.31646/gbio.218
Journal articles | 2022
Kunasekaran M; Hutchinson D; Stone H; Chen X, 2022, 'Unknown skin disease among Senegalese fishermen', Global Biosecurity, 4, http://dx.doi.org/10.31646/gbio.153
Journal articles | 2022
Quigley A; Nguyen PY; Stone H; Heslop DJ; Chughtai AA; MacIntyre CR, 2022, 'Estimated Mask Use and Temporal Relationship to COVID-19 Epidemiology of Black Lives Matter Protests in 12 Cities', Journal of Racial and Ethnic Health Disparities, 10, http://dx.doi.org/10.1007/s40615-022-01308-4
Journal articles | 2022
Quigley A; Stone H; Nguyen PY; Chughtai AA; MacIntyre CR, 2022, 'COVID-19 outbreaks in aged-care facilities in Australia', Influenza and other Respiratory Viruses, 16, pp. 429 - 437, http://dx.doi.org/10.1111/irv.12942
Journal articles | 2021
Bahl P; De Silva C; Bhattacharjee S; Stone H; Doolan C; Chughtai AA; Macintyre CR, 2021, 'Droplets and Aerosols Generated by Singing and the Risk of Coronavirus Disease 2019 for Choirs', Clinical Infectious Diseases, 72, pp. E639 - E641, http://dx.doi.org/10.1093/cid/ciaa1241
Journal articles | 2021
Chawla D; Trent M; Moa A; Stone H; MacIntyre R, 2021, 'An analysis of COVID-19 outbreaks in schools in South and Southwestern United States using open-source data', Global Biosecurity, 3, http://dx.doi.org/10.31646/gbio.132
Journal articles | 2021
Hutchinson D; Williams H; Stone H, 2021, 'COVID-19 Variants of Concern in Australia, September 2020-April 2021', Global Biosecurity, 3, http://dx.doi.org/10.31646/gbio.111
Journal articles | 2021
Kunasekaran M; Hutchinson D; Stone H; Chen X; Moa A, 2021, 'Is the Delta Plus Variant (B.1.617.2/AY1) more serious than the Delta Variant?', Global Biosecurity, 3, http://dx.doi.org/10.31646/gbio.139
Journal articles | 2021
Lim S; MacIntyre R; Nguyen P; Quigley A; Stone H, 2021, 'Cruise Ship Travel and the Spread of COVID-19 – Australia as a Case Study', International Journal of Travel Medicine and Global Health, 9, pp. 10 - 18, http://dx.doi.org/10.34172/ijtmgh.2021.03
Journal articles | 2021
Quigley AL; Stone H; Nguyen PY; Chughtai AA; MacIntyre CR, 2021, 'Estimating the burden of COVID-19 on the Australian healthcare workers and health system during the first six months of the pandemic', International Journal of Nursing Studies, 114, pp. 103811, http://dx.doi.org/10.1016/j.ijnurstu.2020.103811
Journal articles | 2021
Quigley AL; Stone H; Yen Nguyen P; Chughtai AA; Raina MacIntyre C; MacIntyre R; Nguyen P, 2021, 'Erratum to “Estimating the burden of COVID-19 on the Australian healthcare workers and health system during the first six months of the pandemic” [International Journal of Nursing Studies, 114 (2021), 103811] (International Journal of Nursing Studies (2021) 114, (S0020748920302972), (10.1016/j.ijnurstu.2020.103811))', International Journal of Nursing Studies, 121, pp. 104031, http://dx.doi.org/10.1016/j.ijnurstu.2021.104031
Journal articles | 2021
Stone H; Lim S; Kunasekaran M; Nunes-Vaz R, 2021, 'Greater Sydney SARS-CoV-2 Observations from the 16th of June to the 13th of July', Global Biosecurity, 3, http://dx.doi.org/10.31646/gbio.125
Journal articles | 2021
Stone H; Lim S; Kunasekaran M, 2021, 'Greater Sydney SARS-CoV-2 Observations from the 16th of June to the 13th of July', Global Biosecurity, http://dx.doi.org/10.31646/gbio.125/
Journal articles | 2021
Williams H; Hutchinson D; Stone H, 2021, 'Watching Brief: The evolution and impact of COVID-19 variants B.1.1.7, B.1.351, P.1 and B.1.617', Global Biosecurity, 3, http://dx.doi.org/10.31646/gbio.112
Journal articles | 2020
Stone H; Moa A; Macintyre R; Chughtai A, 2020, 'Using open source data to estimate the global epidemiology of pertussis', Global Biosecurity, 2, http://dx.doi.org/10.31646/gbio.65
Preprints | 2025
Du J; Stone H; Yang Y; Desai A; Xue H; Züfle A; MacIntyre CR; Salim FD, 2025, BLUE: Bi-layer Heterogeneous Graph Fusion Network for Avian Influenza
Forecasting, http://arxiv.org/abs/2505.22692v1
Preprints | 2025
Stone H; Du J; Xue H; Scotch M; Heslop D; Züfle A; MacIntyre CR; Salim F, 2025, A Probabilistic Framework for Imputing Genetic Distances in
Spatiotemporal Pathogen Models, http://arxiv.org/abs/2506.09076v1
Preprints | 2024
Lim S; Jindal M; Stone H; McIntyre R, 2024, A geospatial perspective towards the role of migratory birds and poultry in the spread of Avian Influenza, http://dx.doi.org/10.21203/rs.3.rs-4451337/v1
Preprints | 2024
Stone H; Jindal M; Lim S; Dawson R; Quigley A; Scotch M; MacIntyre R, 2024, Potential Pathways of Spread of Highly Pathogenic Avian Influenza A/H5N1 Clade 2.3.4.4b Across Dairy Farms in the United States, http://dx.doi.org/10.1101/2024.05.02.24306785
Preprints | 2022
Stone H; Heslop D; Lim S; Sarmiento I; Kunasekaran M; MacIntyre CR, 2022, Open-Source Intelligence for Detection of Radiological Events and Syndromes Following the Invasion of Ukraine in 2022: Observational Study (Preprint), http://dx.doi.org/10.2196/preprints.39895
Quigley AL; Nguyen PY; Stone H; Heslop D; Chughtai AA; MacIntyre R, 2020, Estimated Mask Use and Temporal Relationship to COVID-19 Epidemiology of Black Lives Matter Protests in 12 Cities, http://dx.doi.org/10.2139/ssrn.3712951
