Dr Alamgir Khan

Books

Book Chapters

Edited Books

Journal Articles

Journal articles | 2018

Varela C; Schmidt SA; Borneman AR; Pang CNI; Krömerx JO; Khan A; Song X; Hodson MP; Solomon M; Mayr CM; Hines W; Pretorius IS; Baker MS; Roessner U; Mercurio M; Henschke PA; Wilkins MR; Chambers PJ, 2018, 'Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains', Metabolic Engineering, 49, pp. 178 - 191, http://dx.doi.org/10.1016/j.ymben.2018.08.006

Journal articles | 2017

Ahuja R; Almuzian M; Khan A; Pascovici D; Dalci O; Darendeliler MA, 2017, 'A preliminary investigation of short-term cytokine expression in gingival crevicular fluid secondary to high-level orthodontic forces and the associated root resorption: case series analytical study', Progress in Orthodontics, 18, pp. 23, http://dx.doi.org/10.1186/s40510-017-0177-x

Journal articles | 2017

Lim SY; Lee JH; Welsh SJ; Ahn SB; Breen E; Khan A; Carlino MS; Menzies AM; Kefford RF; Scolyer RA; Long GV; Rizos H, 2017, 'Evaluation of two high-throughput proteomic technologies for plasma biomarker discovery in immunotherapy-treated melanoma patients', Biomarker Research, 5, pp. 32, http://dx.doi.org/10.1186/s40364-017-0112-9

Journal articles | 2017

O'Doherty PJ; Khan A; Johnson AJ; Rogers PJ; Bailey TD; Wu MJ, 2017, 'Proteomic response to linoleic acid hydroperoxide in Saccharomyces cerevisiae', FEMS Yeast Research, 17, pp. fox022, http://dx.doi.org/10.1093/femsyr/fox022

Journal articles | 2017

Tan SH; Lee A; Pascovici D; Care N; Birzniece V; Ho K; Molloy MP; Khan A; Ho K, 2017, 'Plasma biomarker proteins for detection of human growth hormone administration in athletes', Scientific Reports, 7, pp. 10039, http://dx.doi.org/10.1038/s41598-017-09968-7

Journal articles | 2016

Breen EJ; Tan W; Khan A, 2016, 'The Statistical Value of Raw Fluorescence Signal in Luminex xMAP Based Multiplex Immunoassays', Scientific Reports, 6, http://dx.doi.org/10.1038/srep26996

Journal articles | 2015

Breen EJ; Polaskova V; Khan A, 2015, 'Bead-based multiplex immuno-assays for cytokines, chemokines, growth factors and other analytes: Median fluorescence intensities versus their derived absolute concentration values for statistical analysis', Cytokine, 71, pp. 188 - 198, http://dx.doi.org/10.1016/j.cyto.2014.10.030

Journal articles | 2015

Fernando N; Panozzo J; Tausz M; Norton R; Fitzgerald G; Khan A; Seneweera S, 2015, 'Rising CO2 concentration altered wheat grain proteome and flour rheological characteristics', Food Chemistry, 170, pp. 448 - 454, http://dx.doi.org/10.1016/j.foodchem.2014.07.044

Journal articles | 2015

Mahboob S; Ahn SB; Cheruku HR; Cantor D; Rennel E; Fredriksson S; Edfeldt G; Breen EJ; Khan A; Mohamedali A; Muktadir MG; Ranganathan S; Tan SH; Nice E; Baker MS, 2015, 'A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers', Clinical Proteomics, 12, http://dx.doi.org/10.1186/s12014-015-9081-x

Journal articles | 2014

Ahn SB; Khan A, 2014, 'Detection and quantitation of twenty-seven cytokines, chemokines and growth factors pre- and post-high abundance protein depletion in human plasma', EuPA Open Proteomics, 3, pp. 78 - 84, http://dx.doi.org/10.1016/j.euprot.2014.02.012

Journal articles | 2014

Khan A; Wesemael W; Moens M, 2014, 'Influence of temperature on the development of the temperate root-knot nematodes Meloidogyne chitwoodi and M. fallax', Russian Journal of Nematology, 22, pp. 1 - 9

Journal articles | 2014

Rogers LJ; Suchowerska N; Khan A; Polaskova V; Mckenzie DR, 2014, 'Profiling of the secretome of human cancer cells: Preparation of supernatant for proteomic analysis', Electrophoresis, 35, pp. 2626 - 2633, http://dx.doi.org/10.1002/elps.201400100

Journal articles | 2013

Schmidt SA; Jacob SS; Ahn SB; Rupasinghe T; Krömer JO; Khan A; Varela C, 2013, 'Two strings to the systems biology bow: Co-extracting the metabolome and proteome of yeast', Metabolomics, 9, pp. 173 - 188, http://dx.doi.org/10.1007/s11306-012-0437-1

Journal articles | 2012

Khan A, 2012, 'Detection and quantitation of forty eight cytokines, chemokines, growth factors and nine acute phase proteins in healthy human plasma, saliva and urine', Journal of Proteomics, 75, pp. 4802 - 4819, http://dx.doi.org/10.1016/j.jprot.2012.05.018

Journal articles | 2011

Tokushige N; Markham R; Crossett B; Ahn SB; Nelaturi VL; Khan A; Fraser IS, 2011, 'Discovery of a novel biomarker in the urine in women with endometriosis', Fertility and Sterility, 95, pp. 46 - 49, http://dx.doi.org/10.1016/j.fertnstert.2010.05.016

Journal articles | 2011

Varela C; Schmidt SA; Borneman AR; Kromer JO; Khan A; Chambers PJ, 2011, 'Systems biology: a new paradigm for industrial yeast strain development', MICROBIOLOGY AUSTRALIA, 32, pp. 151 - 155, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000216298700004&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Journal articles | 2010

Polaskova V; Kapur A; Khan A; Molloy MP; Baker MS, 2010, 'High-abundance protein depletion: Comparison of methods for human plasma biomarker discovery', Electrophoresis, 31, pp. 471 - 482, http://dx.doi.org/10.1002/elps.200900286

Journal articles | 2010

Polaskova V; Kapur A; Khan A; Molloy MP; Baker MS, 2010, 'High‐abundance protein depletion: Comparison of methods for human plasma biomarker discovery', PROTEOMICS – Clinical Applications, 4, pp. 774 - 774, http://dx.doi.org/10.1002/prca.201090054

Journal articles | 2009

Peterson R; Grinyer J; Joss J; Khan A; Nevalainen H, 2009, 'Fungal proteins with mannanase activity identified directly from a Congo Red stained zymogram by mass spectrometry', Journal of Microbiological Methods, 79, pp. 374 - 377, http://dx.doi.org/10.1016/j.mimet.2009.10.009

Journal articles | 2008

Gibson F; Anderson L; Babnigg G; Baker M; Berth M; Binz PA; Borthwick A; Cash P; Day BW; Friedman DB; Garland D; Gutstein HB; Hoogland C; Jones NA; Khan A; Klose J; Lamond AI; Lemkin PF; Lilley KS; Minden J; Morris NJ; Paton NW; Pisano MR; Prime JE; Rabilloud T; Stead DA; Taylor CF; Voshol H; Wipat A; Jones AR, 2008, 'Guidelines for reporting the use of gel electrophoresis in proteomics', Nature Biotechnology, 26, pp. 863 - 864, http://dx.doi.org/10.1038/nbt0808-863

Journal articles | 2008

Khan A; Williams KL; Soon J; Nevalainen HKM, 2008, 'Proteomic analysis of the knob-producing nematode-trapping fungus Monacrosporium lysipagum', Mycological Research, 112, pp. 1447 - 1452, http://dx.doi.org/10.1016/j.mycres.2008.06.003

Journal articles | 2008

Nalos M; Huang S; Sluyter R; Khan A; Santner-Nanan B; Nanan R; McLean AS, 2008, '"Host tissue damage" signal ATP impairs IL-12 and IFNγ secretion in LPS stimulated whole human blood (Intensive Care Medicine DOI: 10.1007/s00134-008-1156-y)', Intensive Care Medicine, 34, pp. 1933, http://dx.doi.org/10.1007/s00134-008-1196-3

Journal articles | 2008

Nalos M; Huang S; Sluyter R; Khan A; Santner-Nanan B; Nanan R; McLean AS, 2008, '"Host tissue damage" signal ATP impairs IL-12 and IFNγ secretion in LPS stimulated whole human blood', Intensive Care Medicine, 34, pp. 1891 - 1897, http://dx.doi.org/10.1007/s00134-008-1156-y

Journal articles | 2007

Khan A; Baker MS, 2007, 'Non-specific binding of monoclonal human erythropoietin antibody AE7A5 to Escherichia coli and Saccharomyces cerevisiae proteins', Clinica Chimica Acta, 379, pp. 173 - 175, http://dx.doi.org/10.1016/j.cca.2006.12.020

Journal articles | 2007

Nalos M; Huang S; Khan A; McLean A, 2007, 'Interferon gamma levels are reduced by adenosine 5'-triphosphate in lipopolysaccharide-stimulated whole human blood', Critical Care, 11, pp. P5 - P5, http://dx.doi.org/10.1186/cc5165

Journal articles | 2006

Khan A; Packer N, 2006, 'Reply by the authors to 'New urinary EPO drug testing method using two-dimensional gel electrophoresis'', Clinica Chimica Acta, 373, pp. 188, http://dx.doi.org/10.1016/j.cca.2006.03.022

Journal articles | 2006

Khan A; Packer NH, 2006, 'Simple urinary sample preparation for proteomic analysis', Journal of Proteome Research, 5, pp. 2824 - 2838, http://dx.doi.org/10.1021/pr060305y

Journal articles | 2006

Khan A; Williams KL; Nevalainen HKM, 2006, 'Control of plant-parasitic nematodes by Paecilomyces lilacinus and Monacrosporium lysipagum in pot trials', BioControl, 51, pp. 643 - 658, http://dx.doi.org/10.1007/s10526-005-4241-y

Journal articles | 2006

Khan A; Williams KL; Nevalainen HKM, 2006, 'Infection of plant-parasitic nematodes by Paecilomyces lilacinus and Monacrosporium lysipagum', BioControl, 51, pp. 659 - 678, http://dx.doi.org/10.1007/s10526-005-4242-x

Journal articles | 2005

Khan A; Grinyer J; Truong ST; Breen EJ; Packer NH, 2005, 'New urinary EPO drug testing method using two-dimensional gel electrophoresis', Clinica Chimica Acta, 358, pp. 119 - 130, http://dx.doi.org/10.1016/j.cccn.2005.03.013

Journal articles | 2004

Khan A; Williams KL; Nevalainen HKM, 2004, 'Effects of Paecilomyces lilacinus protease and chitinase on the eggshell structures and hatching of Meloidogyne javanica juveniles', Biological Control, 31, pp. 346 - 352, http://dx.doi.org/10.1016/j.biocontrol.2004.07.011

Journal articles | 2003

Khan A; Williams K; Molloy MP; Nevalainen H, 2003, 'Purification and characterization of a serine protease and chitinases from Paecilomyces lilacinus and detection of chitinase activity on 2D gels', Protein Expression and Purification, 32, pp. 210 - 220, http://dx.doi.org/10.1016/j.pep.2003.07.007

Journal articles | 2003

Khan A; Williams K; Nevalainen H, 2003, 'Testing the nematophagous biological control strain Paecilomyces lilacinus 251 for paecilotoxin production', FEMS Microbiology Letters, 227, pp. 107 - 111, http://dx.doi.org/10.1016/S0378-1097(03)00654-2

Journal articles | 1999

Holland RJ; Williams KL; Khan A, 1999, 'Infection of Meloidogyne javanica by Paecilomyces lilacinus', Nematology, 1, pp. 131 - 139, http://dx.doi.org/10.1163/156854199508090

Working Papers

Other

Preprints | 2020

Herwanto V; Wang Y; Shojaei M; Khan A; Lai K; Shetty A; Huang S; Chew T; Teoh S; Nalos M; Chakraborty M; McLean AS; Tang BMP, 2020, Impaired peripheral mononuclear cell metabolism in patients at risk of developing sepsis: A cohort study, http://dx.doi.org/10.1101/2020.12.10.20244707

Preprints | 2009

Gibson F; Anderson L; Babnigg G; Baker M; Berth M; Binz P-A; Borthwick A; Cash P; Day BW; Friedman DB; Garland D; Gutstein HB; Hoogland C; Jones NA; Khan A; Klose J; Lamond AI; Lemkin PF; Lilley KS; Minden J; Morris NJ; Paton NW; Pisano MR; Prime JE; Rabilloud T; Stead DA; Taylor CF; Voshol H; Wipat A; Jones AR, 2009, Guidelines for reporting the use of gel electrophoresis in proteomics, http://dx.doi.org/10.48550/arxiv.0904.0694

Conference Papers | 2006

Baker MS; Khan A; Lee A; Shum W-K; Soon J; Molloy MP; Polaskova V; Tan S-H; Kapur A, 2006, 'A comparison of immunodepletion strategies for plasma biomarker discovery', in MOLECULAR & CELLULAR PROTEOMICS, AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC, pp. S180 - S180, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000241506400410&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Conference Papers | 2006

Kapur A; Khan A; Shum W-K; Tan S-H; Molloy MP; Polaskova V; Baker MS, 2006, 'A novel approach for the depletion of high abundance proteins from human plasma', in MOLECULAR & CELLULAR PROTEOMICS, AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC, pp. S209 - S209, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000241506401056&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Conference Papers | 2006

Khan A; Soon J; Kapur A; Molloy MP; Baker MS, 2006, 'Optimisation of human plasma sample preparation using immunodepletion and DIGE for biomarker discovery', in MOLECULAR & CELLULAR PROTEOMICS, AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC, pp. S209 - S209, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000241506401057&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

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Dr Alamgir Khan