Dr Alice Michie

Dr Alice Michie

Post-Doc Fellow

B Science, University of Western Australia, 2014

M Inf Dis 2016 (Distinction), University of Western Australia, 2016

PhD, University of Western Australia, 2021

Medicine & Health
The Kirby Institute

Dr Alice Michie is a Postdoctoral Scientist at the Virology Research Laboratory, within Prince of Wales Hospital. She holds a Bachelor of Science (2014) and a Master of Infectious Diseases with Distinction (2016) from the University of Western Australia, where she also completed her PhD in 2021. Her doctoral research focused on the genomic and phylogenetic characterisation of key Australian mosquito-borne viruses, in a landscape of limited genomic data availability.

At the VRL, Dr Michie has established a wastewater-based genomic surveillance protocol of SARS-CoV-2 from NSW sentinel sites, with regular reporting of lineage fluctuations to the NSW Ministry of Health. She has recently joined the Kirby Institute as part of the MRFF-funded H2Seq project, which aims to develop hepatitis C virus and HIV whole genome sequencing protocols to expand access and sharing of genomic data for cluster identification.

Dr Michie's research interests include wastewater-based epidemiology, arthropod-borne viruses, One Health, viral genomics and metagenomic approaches.

Location
POW & UNSW Virology Research Laboratory Prince of Wales Hospital Level 3, Clinical Sciences Building High Street, Randwick NSW 2031, Australia
  • Journal articles | 2025
    Ernst T; Michie A; Sikazwe C; Nicholson J; Levy A; Chua ILJ; Mackenzie JS; Smith DW; Imrie A, 2025, 'Genetic diversity of Murray Valley encephalitis virus 1951–2020 identified via phylogenetic and evolutionary analyses', Plos Neglected Tropical Diseases, 19, http://dx.doi.org/10.1371/journal.pntd.0013181
    Journal articles | 2024
    Michie A; Ernst T; Pyke AT; Nicholson J; Mackenzie JS; Smith DW; Imrie A, 2024, 'Genomic Analysis of Sindbis Virus Reveals Uncharacterized Diversity within the Australasian Region, and Support for Revised SINV Taxonomy', Viruses, 16, http://dx.doi.org/10.3390/v16010007
    Journal articles | 2024
    Michie A, 2024, 'Wastewater-based SARS-CoV-2 surveillance and sequencing', Microbiology Australia, 45, pp. 8 - 12, http://dx.doi.org/10.1071/MA24004
    Journal articles | 2024
    Pyke AT; Wilson DJ; Michie A; Mackenzie JS; Imrie A; Cameron J; Doggett SL; Haniotis J; Herrero LJ; Caly L; Lynch SE; Mee PT; Madzokere ET; Ramirez AL; Paramitha D; Hobson-Peters J; Smith DW; Weir R; Sullivan M; Druce J; Melville L; Robson J; Gibb R; Van Den Hurk AF; Duchene S, 2024, 'Independent repeated mutations within the alphaviruses Ross River virus and Barmah Forest virus indicates convergent evolution and past positive selection in ancestral populations despite ongoing purifying selection', Virus Evolution, 10, http://dx.doi.org/10.1093/ve/veae080
    Journal articles | 2023
    Tulloch RL; Kim K; Sikazwe C; Michie A; Burrell R; Holmes EC; Dwyer DE; Britton PN; Kok J; Eden JS, 2023, 'RAPIDprep: A Simple, Fast Protocol for RNA Metagenomic Sequencing of Clinical Samples', Viruses, 15, http://dx.doi.org/10.3390/v15041006
    Journal articles | 2022
    Eden JS; Sikazwe C; Xie R; Deng YM; Sullivan SG; Michie A; Levy A; Cutmore E; Blyth CC; Britton PN; Crawford N; Dong X; Dwyer DE; Edwards KM; Horsburgh BA; Foley D; Kennedy K; Minney-Smith C; Speers D; Tulloch RL; Holmes EC; Dhanasekaran V; Smith DW; Kok J; Barr IG; Alafaci A; Carter I; Daley A; Francis M; Kesson A; Moore H; Ngo C; Tran T, 2022, 'Off-season RSV epidemics in Australia after easing of COVID-19 restrictions', Nature Communications, 13, http://dx.doi.org/10.1038/s41467-022-30485-3
    Journal articles | 2022
    Harapan H; Michie A; Ernst T; Panta K; Mudatsir M; Yohan B; Haryanto S; McCarthy S; Sasmono RT; Imrie A, 2022, 'Co-Circulation of Chikungunya and Multiple DENV Serotypes and Genotypes, Western Indonesia 2015–2016', Viruses, 14, http://dx.doi.org/10.3390/v14010099
    Journal articles | 2022
    Harapan H; Panta K; Michie A; Ernst T; McCarthy S; Muhsin M; Safarianti S; Zanaria TM; Mudatsir M; Sasmono RT; Imrie A, 2022, 'Hyperendemic Dengue and Possible Zika Circulation in the Westernmost Region of the Indonesian Archipelago', Viruses, 14, http://dx.doi.org/10.3390/v14020219
    Journal articles | 2022
    Sikazwe C; Neave MJ; Michie A; Mileto P; Wang J; Cooper N; Levy A; Imrie A; Baird RW; Currie BJ; Speers D; Mackenzie JS; Smith DW; Williams DT, 2022, 'Molecular detection and characterisation of the first Japanese encephalitis virus belonging to genotype IV acquired in Australia', Plos Neglected Tropical Diseases, 16, http://dx.doi.org/10.1371/journal.pntd.0010754
    Journal articles | 2021
    Michie A; Mackenzie JS; Smith DW; Imrie A, 2021, 'Genome sequence analysis of first ross river virus isolate from papua new guinea indicates long-term, local evolution', Viruses, 13, http://dx.doi.org/10.3390/v13030482
    Journal articles | 2020
    Harapan H; Michie A; Sasmono RT; Imrie A, 2020, 'Dengue: A minireview', Viruses, 12, http://dx.doi.org/10.3390/v12080829
    Journal articles | 2020
    Michie A; Dhanasekaran V; Lindsay MDA; Neville PJ; Nicholson J; Jardine A; Mackenzie JS; Smith DW; Imrie A, 2020, 'Genome-scale phylogeny and evolutionary analysis of Ross River virus reveals periodic sweeps of lineage dominance in Western Australia, 1977–2014', Journal of Virology, 94, http://dx.doi.org/10.1128/JVI.01234-19
    Journal articles | 2020
    Michie A; Ernst T; Chua ILJ; Lindsay MDA; Neville PJ; Nicholson J; Jardine A; Mackenzie JS; Smith DW; Imrie A, 2020, 'Phylogenetic and Timescale Analysis of Barmah Forest Virus as Inferred from Genome Sequence Analysis', Viruses, 12, http://dx.doi.org/10.3390/v12070732
    Journal articles | 2019
    Harapan H; Michie A; Mudatsir M; Nusa R; Yohan B; Wagner AL; Sasmono RT; Imrie A, 2019, 'Chikungunya virus infection in Indonesia: A systematic review and evolutionary analysis', BMC Infectious Diseases, 19, http://dx.doi.org/10.1186/s12879-019-3857-y
    Journal articles | 2019
    Harapan H; Michie A; Mudatsir M; Sasmono RT; Imrie A, 2019, 'Epidemiology of dengue hemorrhagic fever in Indonesia: Analysis of five decades data from the National Disease Surveillance', BMC Research Notes, 12, http://dx.doi.org/10.1186/s13104-019-4379-9
    Journal articles | 2019
    Harapan H; Michie A; Yohan B; Shu PY; Mudatsir M; Sasmono RT; Imrie A, 2019, 'Dengue viruses circulating in Indonesia: A systematic review and phylogenetic analysis of data from five decades', Reviews in Medical Virology, 29, http://dx.doi.org/10.1002/rmv.2037