Associate Professor Christine Chaffer

Associate Professor Christine Chaffer

Conjoint Associate Professor

Director – Cancer Plasticity and Dormancy Program

Faculty – Cancer Call Plasticity, Garvan Institute of Medical Research

Postdoctoral training - Whitehead Institute of Biomedical Research, MIT, Cambridge, USA

PhD in Cancer Biology - The University of Melbourne

Medicine & Health
School of Clinical Medicine

Christine leads the Cancer Cell Plasticity Lab at the Garvan Institute of Medical Research. Her research focuses on cancer cell plasticity – the ability of cancer cells to change their physiological characteristics. This feature allows cancer cells to create and spread tumours around the body, to resist therapies and to recur post-treatment. Christine’s goal is to anticipate and intercept cancer evolution by understanding how tumour cells adapt at the single-cell level, and transform this knowledge into therapies that block recurrence and move us closer to curing metastatic disease.

Christine’s work also aims to provide translational therapeutic benefits. She has challenged, and changed, preestablished paradigms in cancer biology, demonstrating the effects of cancer cell plasticity on driving tumour progression and development into metastatic disease. Christine combines technologies including single-cell transcriptomics, CRISPR functional genomics, organoid and patient-derived models, and live-cell imaging with new machine learning tools to reveal mechanisms that underlie relapse and therapeutic resistance.

 Christine is deeply committed to translating her findings into clinical impact. Her work has directly informed and provided the groundwork for clinical trials, including the 4CAST trial for triple negative breast cancer, which tests a new combination therapy to target a ‘defence switch’ on cancer cells that alerts cancer to the threat of chemotherapy. As Principal Investigator of the inaugural National Breast Cancer Foundation $25 million Clinical Research Accelerator (CRA)—the AllClear program—she leads an international consortium to translate her research on cancer dormancy and plasticity into investigator-initiated clinical trials designed to prevent recurrence in breast cancer.

Phone
+61 2 9355 5824
Location
Kinghorn Cancer Centre Garvan Institute of Medical Research 370 Victoria Street Darlinghurst NSW 2010
  • Journal articles | 2026
    Bleach R; Bozkurt E; Xin J; Sheehan KM; Shirran S; Agbana S; Ola M; Young L; Spoelstra NS; Richer JK; Vargas AC; Goldstein LD; Milloli HH; Chaffer CL; O'Reilly MW; Prehn JH; McIlroy M, 2026, 'Androgen receptor localisation and protein interactions provide insight into steroid mediated metabolic shifts in endocrine resistant breast cancer.', NPJ Breast Cancer, http://dx.doi.org/10.1038/s41523-026-00924-1
    Journal articles | 2026
    Gupta S; Sun X; Tong A; Kuchroo M; Bhaskar D; Liu C; Venkat A; San Juan BP; Rangel L; Rodriguez V; Lock JG; Chaffer CL; Krishnaswamy S, 2026, 'Abstract 5483: Revealing dynamic temporal trajectories and underlying regulatory networks with Cflows.', Cancer Research, 86, pp. 5483 - 5483, http://dx.doi.org/10.1158/1538-7445.am2026-5483
    Journal articles | 2026
    King HE; O’Connell S; Kavanagh D; Mason S; McCool C; Fernandez-Chamorro J; Chaffer CL; Clark SJ; Vieira HGS; Sterne-Weiler T; Weatheritt RJ, 2026, 'Isoform-specific single-cell perturb-seq reveals distinct functions of alternative promoters in drug response', Nucleic Acids Research, 54, http://dx.doi.org/10.1093/nar/gkag118
    Journal articles | 2026
    Kohane FV; Johnstone C; Neumann DP; Gunawan I; Huang T; Vafaee F; Chaffer CL; Lock JG, 2026, 'Epithelial–mesenchymal cell state heterogeneity predetermines differential phospho-signaling responses to EGF stimulation', Molecular Biology of the Cell, 37, http://dx.doi.org/10.1091/mbc.E25-07-0349
    Journal articles | 2025
    Chaffer CL; Milioli HH; San Juan BP; Dear RF; Liu JJ, 2025, 'Abstract 4744: State-gating cancer to prevent chemotherapy-resistance', Cancer Research, 85, pp. 4744 - 4744, http://dx.doi.org/10.1158/1538-7445.am2025-4744
    Journal articles | 2025
    Dhenni R; Hoppé AC; Reynaldi A; Kyaw W; Handoko NT; Grootveld AK; Keith YH; Bhattacharyya ND; Ahel HI; Telfser AJ; McCorkindale AN; Yazar S; Bui CHT; Smith JT; Khoo WH; Boyd M; Obeid S; Milner B; Starr M; Brilot F; Milogiannakis V; Akerman A; Aggarwal A; Davenport MP; Deenick EK; Chaffer CL; Croucher PI; Brink R; Goldstein LD; Cromer D; Turville SG; Kelleher AD; Venturi V; Munier CML; Phan TG, 2025, 'Macrophages direct location-dependent recall of B cell memory to vaccination', Cell, 188, pp. 3477 - 3496.e22, http://dx.doi.org/10.1016/j.cell.2025.04.005
    Journal articles | 2025
    Silvani G; Kopecky C; Romanazzo S; Rodríguez V; Das A; Pandzic E; Lock JG; Chaffer CL; Poole K; Kilian KA, 2025, 'Capillary constrictions prime cancer cell tumorigenicity through PIEZO1', Nature Communications, 16, http://dx.doi.org/10.1038/s41467-025-63374-6
    Journal articles | 2025
    Venkat A; Youlten SE; San Juan BP; Purcell CA; Gupta S; Amodio M; Neumann DP; Lock JG; Westacott AE; McCool CS; Burkhardt DB; Benz A; Mollbrink A; Lundeberg J; van Dijk D; Holst J; Goldstein LD; Kummerfeld S; Krishnaswamy S; Chaffer CL, 2025, 'AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity', Cancer Discovery, 15, pp. 2139 - 2165, http://dx.doi.org/10.1158/2159-8290.CD-24-0684
    Journal articles | 2024
    Dear RF-G; Liu JJ; Cosman R; Walsh N; Selga M; Perez San Juan B; Purcell C; Chaffer CL, 2024, '4CAST: A phase 1b dose exploration, open-label, single-center study evaluating the safety of INO-464 in combination with chemotherapy in patients with metastatic breast cancer.', Journal of Clinical Oncology, 42, pp. e13112 - e13112, http://dx.doi.org/10.1200/jco.2024.42.16_suppl.e13112
    Journal articles | 2024
    Mason S; Chung S; Perez San Juan B; McCool C; Day B; Zaccaron Milioli H; Dear RF-G; Sim H-W; Holst J; Chaffer CL, 2024, 'Targeting androgen receptor signaling in glioblastoma: A novel biomarker and therapeutic approach.', Journal of Clinical Oncology, 42, pp. e14016 - e14016, http://dx.doi.org/10.1200/jco.2024.42.16_suppl.e14016
    Journal articles | 2024
    Mason SRE; Chung S; Satgunaseelan L; Mccool C; Juan BP-S; Gupta S; Zaman A; Day BW; Dear R; Sim H-W; Holst J; Chaffer CL, 2024, 'EXPLORING THE ROLE OF ANDROGEN RECEPTOR SIGNALING IN GLIOBLASTOMA IN AN ORTHOTOPIC ANIMAL MODEL', NEURO-ONCOLOGY, 26, http://dx.doi.org/10.1093/neuonc/noae165.0957
    Journal articles | 2024
    Phan TG; Weilbaecher KN; Aft R; Croucher PI; Chaffer CL, 2024, 'Chemotherapy and the Extra-Tumor Immune Microenvironment: EXTRA-TIME', Cancer Discovery, 14, pp. 643 - 647, http://dx.doi.org/10.1158/2159-8290.CD-23-1543
    Journal articles | 2024
    Sahoo S; Ramu S; Nair MG; Pillai M; San Juan BP; Milioli HZ; Mandal S; Naidu CM; Mavatkar AD; Subramaniam H; Neogi AG; Chaffer CL; Prabhu JS; Somarelli JA; Jolly MK, 2024, 'Increased prevalence of hybrid epithelial/mesenchymal state and enhanced phenotypic heterogeneity in basal breast cancer', Iscience, 27, http://dx.doi.org/10.1016/j.isci.2024.110116
    Journal articles | 2023
    Amodio M; Youlten SE; Venkat A; San Juan BP; Chaffer CL; Krishnaswamy S, 2023, 'Single-cell multi-modal GAN reveals spatial patterns in single-cell data from triple-negative breast cancer', Patterns, http://dx.doi.org/10.1016/j.patter.2022.100577
    Journal articles | 2023
    Dear RF; Batty K; Perez B; Chaffer C, 2023, 'Abstract OT1-02-01: 4CAST: A Phase 1b dose exploration and dose expansion, open-label study evaluating the safety and efficacy of INO-464 in combination with Chemotherapy in patients with metASTatic breast cancer', Cancer Research, 83, http://dx.doi.org/10.1158/1538-7445.sabcs22-ot1-02-01
    Journal articles | 2023
    Mason S; Chung S; Juan BPS; Sim H-W; Dear R; Day B; Holst J; Chaffer C, 2023, 'STEM-03. TARGETING ANDROGEN SIGNALING IN GLIOBLASTOMA', Neuro-Oncology, 25, pp. v33 - v33, http://dx.doi.org/10.1093/neuonc/noad179.0130
    Journal articles | 2023
    McKinnon JC; Milioli HH; Purcell CA; Chaffer CL; Wadie B; Alexandrov T; Mitchell TW; Ellis SR, 2023, 'Enhancing metabolite coverage in MALDI-MSI using laser post-ionisation (MALDI-2)', Analytical Methods, 15, pp. 4311 - 4320, http://dx.doi.org/10.1039/d3ay01046e
    Journal articles | 2023
    Waryah C; Cursons J; Foroutan M; Pflueger C; Wang E; Molania R; Woodward E; Sorolla A; Wallis C; Moses C; Glas I; Magalhães L; Thompson EW; Fearnley LG; Chaffer CL; Davis M; Papenfuss AT; Redfern A; Lister R; Esteller M; Blancafort P, 2023, 'Synthetic Epigenetic Reprogramming of Mesenchymal to Epithelial States Using the CRISPR/dCas9 Platform in Triple Negative Breast Cancer', Advanced Science, 10, http://dx.doi.org/10.1002/advs.202301802
    Journal articles | 2022
    Burkhardt DB; San Juan BP; Lock JG; Krishnaswamy S; Chaffer CL, 2022, 'Mapping Phenotypic Plasticity upon the Cancer Cell State Landscape Using Manifold Learning', Cancer Discovery, 12, pp. 1847 - 1859, http://dx.doi.org/10.1158/2159-8290.CD-21-0282
    Journal articles | 2019
    Juan BPS; Zadeh S; Ganju V; Vargas C; O'Toole S; Lim E; Davis M; Chaffer C, 2019, 'Unravelling the role of cell plasticity in BrCa development and metastasis', Oncology Abstracts, http://dx.doi.org/10.1530/oncolabs.1.p040
    Journal articles | 2019
    San Juan BP; Garcia-Leon MJ; Rangel L; Goetz JG; Chaffer CL, 2019, 'The complexities of metastasis', Cancers, 11, http://dx.doi.org/10.3390/cancers11101575
    Journal articles | 2018
    Castaño Z; San Juan BP; Spiegel A; Pant A; DeCristo MJ; Laszewski T; Ubellacker JM; Janssen SR; Dongre A; Reinhardt F; Henderson A; del Rio AG; Gifford AM; Herbert ZT; Hutchinson JN; Weinberg RA; Chaffer CL; McAllister SS, 2018, 'IL-1β inflammatory response driven by primary breast cancer prevents metastasis-initiating cell colonization', Nature Cell Biology, 20, pp. 1084 - 1097, http://dx.doi.org/10.1038/s41556-018-0173-5
    Journal articles | 2018
    Chaffer CL; Goetz JG, 2018, 'CD44 Orchestrates Metastatic Teamwork', Developmental Cell, 47, pp. 691 - 693, http://dx.doi.org/10.1016/j.devcel.2018.11.038
    Journal articles | 2018
    Li J; Choi PS; Chaffer CL; Labella K; Hwang JH; Giacomelli AO; Kim JW; Ilic N; Doench JG; Ly SH; Dai C; Hagel K; Hong AL; Gjoerup O; Goel S; Ge JY; Root DE; Zhao JJ; Brooks AN; Weinberg RA; Hahn WC, 2018, 'An alternative splicing switch in FLNB promotes the mesenchymal cell state in human breast cancer', Elife, 7, http://dx.doi.org/10.7554/eLife.37184
    Journal articles | 2018
    van Dijk D; Sharma R; Nainys J; Yim K; Kathail P; Carr AJ; Burdziak C; Moon KR; Chaffer CL; Pattabiraman D; Bierie B; Mazutis L; Wolf G; Krishnaswamy S; Pe'er D, 2018, 'Recovering Gene Interactions from Single-Cell Data Using Data Diffusion', Cell, 174, pp. 716 - 729.e27, http://dx.doi.org/10.1016/j.cell.2018.05.061
    Journal articles | 2017
    Bierie B; Pierce SE; Kroeger C; Stover DG; Pattabiraman DR; Thiru P; Donaher JL; Reinhardt F; Chaffer CL; Keckesova Z; Weinberg RA, 2017, 'Integrin-β4 identifies cancer stem cell-enriched populations of partially mesenchymal carcinoma cells', Proceedings of the National Academy of Sciences of the United States of America, 114, pp. E2337 - E2346, http://dx.doi.org/10.1073/pnas.1618298114
    Journal articles | 2016
    Chaffer CL; San Juan BP; Lim E; Weinberg RA, 2016, 'EMT, cell plasticity and metastasis', Cancer and Metastasis Reviews, 35, pp. 645 - 654, http://dx.doi.org/10.1007/s10555-016-9648-7
    Journal articles | 2015
    Chaffer CL; Weinberg RA, 2015, 'How does multistep tumorigenesis really proceed?', Cancer Discovery, 5, pp. 22 - 24, http://dx.doi.org/10.1158/2159-8290.CD-14-0788
    Journal articles | 2015
    Katajisto P; Döhla J; Chaffer CL; Pentinmikko N; Marjanovic N; Iqbal S; Zoncu R; Chen W; Weinberg RA; Sabatini DM, 2015, 'Asymmetric apportioning of aged mitochondria between daughter cells is required for stemness', Science, 348, pp. 340 - 343, http://dx.doi.org/10.1126/science.1260384
    Journal articles | 2013
    Chaffer CL; Marjanovic ND; Lee T; Bell G; Kleer CG; Reinhardt F; D'Alessio AC; Young RA; Weinberg RA, 2013, 'XPoised chromatin at the ZEB1 promoter enables breast cancer cell plasticity and enhances tumorigenicity', Cell, 154, pp. 61, http://dx.doi.org/10.1016/j.cell.2013.06.005
    Journal articles | 2013
    Marjanovic ND; Weinberg RA; Chaffer CL, 2013, 'Cell plasticity and heterogeneity in cancer', Clinical Chemistry, 59, pp. 168 - 179, http://dx.doi.org/10.1373/clinchem.2012.184655
    Journal articles | 2013
    Marjanovic ND; Weinberg RA; Chaffer CL, 2013, 'Poised with purpose: Cell plasticity enhances tumorigenicity', Cell Cycle, 12, pp. 2713 - 2714, http://dx.doi.org/10.4161/cc.26075
    Journal articles | 2011
    Chaffer CL; Brueckmann I; Scheel C; Kaestli AJ; Wiggins PA; Rodrigues LO; Brooks M; Reinhardt F; Suc Y; Polyak K; Arendt LM; Kuperwasser C; Bierie B; Weinberg RA, 2011, 'Normal and neoplastic nonstem cells can spontaneously convert to a stem-like state', Proceedings of the National Academy of Sciences of the United States of America, 108, pp. 7950 - 7955, http://dx.doi.org/10.1073/pnas.1102454108
    Journal articles | 2011
    Chaffer CL; Weinberg RA, 2011, 'A perspective on cancer cell metastasis', Science, 331, pp. 1559 - 1564, http://dx.doi.org/10.1126/science.1203543
    Journal articles | 2011
    Scheel C; Eaton EN; Li SHJ; Chaffer CL; Reinhardt F; Kah KJ; Bell G; Guo W; Rubin J; Richardson AL; Weinberg RA, 2011, 'Paracrine and autocrine signals induce and maintain mesenchymal and stem cell states in the breast', Cell, 145, pp. 926 - 940, http://dx.doi.org/10.1016/j.cell.2011.04.029
    Journal articles | 2010
    Chaffer CL; Weinberg RA, 2010, 'Cancer cell of origin: Spotlight on luminal progenitors', Cell Stem Cell, 7, pp. 271 - 272, http://dx.doi.org/10.1016/j.stem.2010.08.008
    Journal articles | 2010
    Tilkorn DJ; Lokmic Z; Chaffer CL; Mitchell GM; Morrison WA; Thompson EW, 2010, 'Disparate companions: Tissue engineering meets cancer research', Cells Tissues Organs, 192, pp. 141 - 157, http://dx.doi.org/10.1159/000308892
    Journal articles | 2009
    Gupta PB; Chaffer CL; Weinberg RA, 2009, 'Cancer stem cells: Mirage or reality?', Nature Medicine, 15, pp. 1010 - 1012, http://dx.doi.org/10.1038/nm0909-1010
    Journal articles | 2007
    Chaffer CL; Dopheide B; Savagner P; Thompson EW; Williams ED, 2007, 'Aberrant fibroblast growth factor receptor signaling in bladder and other cancers', Differentiation, 75, pp. 831 - 842, http://dx.doi.org/10.1111/j.1432-0436.2007.00210.x
    Journal articles | 2006
    Chaffer CL; Brennan JP; Slavin JL; Blick T; Thompson EW; Williams ED, 2006, 'Mesenchymal-to-epithelial transition facilitates bladder cancer metastasis: Role of fibroblast growth factor receptor-2', Cancer Research, 66, pp. 11271 - 11278, http://dx.doi.org/10.1158/0008-5472.CAN-06-2044
    Journal articles | 2006
    Chaffer CL; Thomas DM; Thompson EW; Williams ED, 2006, 'PPARγ-independent induction of growth arrest and apoptosis in prostate and bladder carcinoma', BMC Cancer, 6, http://dx.doi.org/10.1186/1471-2407-6-53
    Journal articles | 2005
    Chaffer CL; Dopheide B; McCulloch DR; Lee AB; Moseley JM; Thompson EW; Williams ED, 2005, 'Upregulated MT1-MMP/TIMP-2 axis in the TSU-Pr1-B1/B2 model of metastatic progression in transitional cell carcinoma of the bladder', Clinical and Experimental Metastasis, 22, pp. 115 - 125, http://dx.doi.org/10.1007/s10585-005-5141-3
    Journal articles | 2002
    Chaffer CL; Morris MJ, 2002, 'The Feeding Response to Melanin-Concentrating Hormone Is Attenuated by Antagonism of the NPY Y1-Receptor in the Rat', Endocrinology, 143, pp. 191 - 197, http://dx.doi.org/10.1210/en.143.1.191
  • Preprints | 2026
    Sun X; Rocha JF; Phelan B; Bhaskar D; Huguet G; Zhang Y; Magruder DS; Tong A; Xu K; Fasina O; Gerstein M; Wolf G; Ivanova N; Chaffer CL; Krishnaswamy S, 2026, MIOFlow 2.0: A unified framework for inferring cellular stochastic dynamics from single cell and spatial transcriptomics data, http://dx.doi.org/10.48550/arxiv.2603.22564
    Preprints | 2025
    King HE; O’Connell S; Kavanagh D; Mason S; McCool C; Fernandez-Chamorro J; Chaffer C; Clark SJ; Vieira HGS; Sterne-Weiler T; Weatheritt RJ, 2025, Isoform-specific single-cell perturb-seq reveals distinct functions of alternative promoters in drug response, http://dx.doi.org/10.1101/2025.07.14.664827
    Preprints | 2025
    Kohane F; Johnstone C; Neumann D; Gunawan I; Huang T; Vafaee F; Chaffer C; Lock J, 2025, Epithelial–mesenchymal cell state heterogeneity predetermines differential phospho-signaling responses to EGF stimulation, http://dx.doi.org/10.1101/2025.07.05.658545
    Preprints | 2025
    Silvani G; Kopecky C; Romanazzo S; Rodriguez V; Das A; Pandzic E; Lock JG; Chaffer C; Poole K; Kilian KA, 2025, Capillary constrictions prime cancer cell tumorigenicity through PIEZO1., http://dx.doi.org/10.1101/2025.07.22.666218
    Conference Papers | 2024
    Mason SRE; Chung S; Satgunaseelan L; Mccool C; Juan BP-S; Gupta S; Zaman A; Day BW; Dear R; Sim H-W; Holst J; Chaffer CL, 2024, 'EXPLORING THE ROLE OF ANDROGEN RECEPTOR SIGNALING IN GLIOBLASTOMA IN AN ORTHOTOPIC ANIMAL MODEL', in NEURO-ONCOLOGY, OXFORD UNIV PRESS INC, TX, Houston, presented at 29th Annual Meeting and Education Day of the Society-for-Neuro-Oncology (SNO), TX, Houston, 21 November 2024 - 24 November 2024, http://dx.doi.org/10.1093/neuonc/noae165.0957
    Preprints | 2024
    Venkat A; Youlten SE; Juan BPS; Purcell C; Amodio M; Burkhardt DB; Benz A; Holst J; McCool C; Mollbrink A; Lundeberg J; van Dijk D; Goldstein LD; Kummerfeld S; Krishnaswamy S; Chaffer CL, 2024, AAnet resolves a continuum of spatially-localized cell states to unveil tumor complexity, http://dx.doi.org/10.1101/2024.05.11.593705
    Preprints | 2023
    Krishnaswamy S; Tong A; Kuchroo M; Gupta S; Venkat A; Juan BS; Rangel L; Zhu B; Lock J; Chaffer C, 2023, Revealing dynamic temporal regulatory networks driving cancer cell state plasticity with neural ODE-based optimal transport, http://dx.doi.org/10.21203/rs.3.rs-3605296/v1
    Preprints | 2023
    Mckinnon J; Milioli H; Purcell C; Chaffer C; Wadie B; Alexandrov T; Mitchell T; Ellis S, 2023, Enhancing Metabolite Coverage in MALDI-MSI using Laser Post-Ionisation (MALDI-2)., http://dx.doi.org/10.26434/chemrxiv-2023-sptss
    Preprints | 2023
    Sahoo S; Ramu S; Nair MG; Pillai M; San Juan BP; Milioli HZ; Mandal S; Naidu CM; Mavatkar AD; Subramaniam H; Neogi AG; Chaffer CL; Prabhu JS; Somarelli JA; Jolly MK, 2023, Multi-modal transcriptomic analysis unravels enrichment of hybrid epithelial/mesenchymal state and enhanced phenotypic heterogeneity in basal breast cancer., http://dx.doi.org/10.1101/2023.09.30.558960
    Preprints | 2023
    Sun X; Gupta S; Tong A; Tong A; Kuchroo M; Kuchroo M; Bhaskar D; Liu C; Venkat A; Juan BS; Rangel L; Rodriguez V; Lock J; Chaffer C; Krishnaswamy S, 2023, Revealing dynamic temporal trajectories and underlying regulatory networks with Cflows, http://dx.doi.org/10.1101/2023.03.28.534644
    Preprints | 2022
    Amodio M; Youlten SE; Venkat A; San Juan BP; Chaffer C; Krishnaswamy S, 2022, Single-Cell Multi-Modal GAN (scMMGAN) reveals spatial patterns in single-cell data from triple negative breast cancer, http://dx.doi.org/10.1101/2022.07.04.498732
    Conference Abstracts | 2022
    Juan BPS; Hediyah-Zadeh S; Rangel L; Rodriguez V; Milioli HH; Kohane F; Purcell CA; Hickey TE; Goldstein LD; Lock JG; Davis MJ; Chaffer CL, 2022, 'Abstract 1029: The anti-androgen seviteronel sensitizes triple-negative breast cancer to chemotherapy', in Cancer Research, American Association for Cancer Research (AACR), Vol. 82, pp. 1029 - 1029, http://dx.doi.org/10.1158/1538-7445.am2022-1029
    Preprints | 2022
    San Juan B; Hediyeh-Zadeh S; Rangel L; Milioli H; Rodriguez V; Bunkum A; Kohane F; Purcell C; Bhuva D; Kurumlian A; Castillo L; Lim E; Gill A; Ganju V; Dear R; O’Toole S; Vargas C; Hickey T; Goldstein L; Lock J; Davis M; Chaffer C, 2022, Targeting phenotypic plasticity prevents metastasis and the development of chemotherapy-resistant disease, http://dx.doi.org/10.1101/2022.03.21.22269988
    Conference Papers | 2021
    Tong A; Juan BPS; Zhu B; Chaffer CL; Krishnaswamy S, 2021, 'Abstract 2839: Understanding the mesenchymal-to-epithelial transition and its drivers in triple-negative breast cancer with continuous normalizing flows', in Cancer Research, American Association for Cancer Research (AACR), pp. 2839 - 2839, http://dx.doi.org/10.1158/1538-7445.am2021-2839
    Conference Papers | 2017
    Li J; Choi P; Chaffer C; Labella K; Kim JW; Doench J; Dai C; Giacomelli A; Ly SH; Hwang J; Hong A; Ilic N; Gjoerup O; Meyerson M; Brooks A; Weinberg R; Hahn W, 2017, 'Abstract 5020: A genome-scale ORF screen reveals an alternative splicing program that regulates mesenchymal and stem-like cell states in breast cancer', in Cancer Research, American Association for Cancer Research (AACR), pp. 5020 - 5020, http://dx.doi.org/10.1158/1538-7445.am2017-5020
    Conference Papers | 2017
    Li J; Choi P; Chaffer C; Labella K; Kim JW; Doench J; Dai C; Giacomelli A; Ly SH; Hwang J; Hong A; Ilic N; Gjoerup O; Meyerson M; Brooks A; Weinberg R; Hahn W, 2017, 'Abstract A36: Genome-scale ORF screening to identify modulators of the epithelial-to-mesenchymal transition', in Molecular Cancer Therapeutics, American Association for Cancer Research (AACR), pp. A36 - A36, http://dx.doi.org/10.1158/1538-8514.synthleth-a36
    Conference Papers | 2016
    Castano Z; Chaffer CL; Spiegel A; Pant A; Richardson AL; Reinhardt F; Marsh T; Janssen S; Gifford AM; Weinberg RA; McAllister SS, 2016, 'Understanding the systemic interactions between primary tumors and disseminated tumor initiating cells', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, CA, San Diego, presented at AACR Special Conference on Function of Tumor Microenvironment in Cancer Progression, CA, San Diego, 07 January 2016 - 10 January 2016, http://dx.doi.org/10.1158/1538-7445.TME16-PR13
    Conference Papers | 2011
    Scheel C; NgEaton E; Li SH-J; Chaffer CL; Reinhardt F; Kah K-J; Bell G; Guo W; Rubin J; Richardson A; Weinberg RA, 2011, 'Formation and maintenance of mesenchymal and stem-cell states in the breast by paracrine and autocrine signals', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, http://dx.doi.org/10.1158/1538-7445.AM2011-LB-108
    Conference Papers | 2007
    Chaffer CL; Thompson EW; Williams ED, 2007, 'Mesenchymal to epithelial transition in development and disease', in Cells Tissues Organs, pp. 7 - 19, http://dx.doi.org/10.1159/000101298
    Conference Papers | 2007
    Williams E; Chaffer C; Oakes SR; Ormandy CJ; Blick T; Thompson E, 2007, 'Mesenchymal to epithetial transition in the establishment of secondary tumours: insights from a bladder carcinoma progression series', in Clinical and Experimental Metastasis, Kluwer Academic Publ, pp. 262 - 262
    Conference Papers | 2006
    Brennan JP; Chaffer CL; Slavin J; Temelcos C; Goad J; Williams ED, 2006, 'Patterns of spread in an orthotopic mouse model of bladder cancer', in BJU INTERNATIONAL, BLACKWELL PUBLISHING, pp. 9 - 9, http://dx.doi.org/10.1111/j.1464-410X.2006.06085_31.x
    Conference Papers | 2006
    Williams ED; Chaffer CL; Oakes SR; Ormandy CJ; Blick T; Thompson EW, 2006, 'Mesenchymal to epithelial transition in the establishment of secondary tumors: Insights from a bladder carcinoma progression series', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000454606204397&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2005
    Brennan JP; Williams ED; Chaffer CL; Goad J; Temelcos C; Slavin J, 2005, 'A novel orthotopic model of muscle-invasive bladder cancer', in BJU INTERNATIONAL, BLACKWELL PUBLISHING, AUSTRALIA, Melbourne, pp. 27 - 27, presented at Annual Scientific Meeting of the Urological- Society-of-Australasia, AUSTRALIA, Melbourne, 13 February 2005 - 17 February 2005, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000236061300125&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Preprints |
    Van Dijk D; Sharma R; Nainys J; Yim K; Kathail P; Carr A; Burdziak C; Moon KR; Chaffer CL; Pattabiraman D; Bierie B; Mazutis L; Wolf G; Krishnaswamy S; Peeer D, Recovering Gene Interactions from Single-Cell Data Using Data Diffusion, http://dx.doi.org/10.2139/ssrn.3155779

2025-2030         National Breast Cancer Foundation Collaborative Accelerator Grant ($25million)

2025-2030         NHMRC Investigator Grant ($2,393,000)

2023-2026         NHMRC Ideas grant ($930K)

2023                  St. Vincent’s Clinic Foundation- Tancred Research Grant ($50K)

2022-2023         MRFF grant – Brain cancer ($550K)

2022-2024         MRFF grant – 4CAST clinical trial in triple-negative breast cancer ($650K)

2022-2024         Australian Research Council – Discovery project ($611K)

2020-2022         NHMRC Ideas grant

2020                  Tour de Cure

2018-2020         Cancer Institute NSW Career Development Fellowship

2018-2020         National Breast Cancer Foundation Investigator Award

2018-2019         St. Vincent’s Clinic Foundation Research Award

2017-2021         Rebecca Wilson Fellowship in Breast Cancer Research

2016-2018         NHMRC Project Grant

2013                  Koch Institute Frontier Research Awards, USA, Peer Reviewed,

2010-2014         Research support – Advanced Medical Research Foundation, USA

2011-2012         Post-doctoral Fellowship – Ludwig Fund for Cancer Research, USA,

2008-2010         CJ Martin Post-doctoral Research Fellowship - NHMRC, Australia

2004-2006         Dora Lush Biomedical Postgraduate Research Scholarship – NHMRC, Australia

 

Using in vitroin vivo models and patient tissue samples, together with the latest sequencing technologies (including single-cell sequencing and spatial transcriptomics), we are interrogating mechanisms that drive cancer cell plasticity with single cell resolution, to address the following key areas:

  • Redefining Cancer Dynamism: Moving beyond the "snapshot" model to treat cancer as a continuously evolving and fluid biological system.
  • Mapping State Transitions: Developing advanced tools to capture and interpret the high-resolution transitions between cancer cell states.
  • Directing Evolutionary Outcomes: Engineering therapeutic strategies that govern cellular plasticity to prevent resistance and fundamentally improve patient survival.

PATIENT ENGAGEMENT

Patient Advocate and Advisory Group (PAAG): Christine leads the AllClear Program, which is committed to meaningfully engaging patients with lived experience of breast cancer, patient advocates and the public throughout our research decision-making - from basic science to clinical research, and experimental design to the dissemination of outcomes. The PAAG includes individuals with the lived experience of breast cancer drawn from across New South Wales, including rural, Aboriginal and Torres Strait Islander and multicultural communities.

Christine also has a long-standing relationship with Lee Hunt, the chair of the PAAG and a cancer consumer and advocate who focuses on improved outcomes, treatment access and survivorship for cancer patients. Lee, along with other PAAG members, facilitated the inclusion of regional, remote and culturally diverse perspectives in the AllClear program, and embedding diversity, equity and inclusion programs into AllClear supported clinical trials.

 

SCIENTIFIC ENGAGEMENT

Scientific Advisory Committee: Christine is part of the Scientific Advisory Committee for Breast Cancer Trials. As part of the SAC, Christine strategically reviews new clinical trial questions, current practices, and patient groups to determine gaps and opportunities for future clinical trials. She also evaluates new clinical trial proposals, prioritising trials with urgent need, and monitors current and ongoing trials for BCT.

Peer review: Christine regularly reviews for national category 1 and major philanthropic grant schemes, including the National Breast Cancer Foundation, Cancer Research Trust WA and the National Health and Medical Research Council. Christine also reviews for leading international peer-reviewed journals including Nature, Nature Cell Biology, Cancer Discovery, Cell Stem Cell, Nature Medicine, Cell, Oncogene, Cancer research, Nature Materials.

 

MEDIA

Media Release: Historic $25 million research grant aims to halve breast cancer deaths

Sydney Morning Herald article: Cancer breakthrough could end relapse for thousands 

ABC News Video: Is artificial intelligence changing the future of healthcare?

Nine News Facebook Video: A/Prof Christine Chaffer spoke with 9 News on The National Breast Cancer Foundation’s landmark investment to drive research focused on stopping breast cancer recurrence

7 News Facebook Video: A/Prof Christine Chaffer speaks with 7NEWS Sydney on the impact of her latest research for triple negative breast cancer moving into clinical trials.

Medical Minds Podcast, 2nd March 2023: New ways of treating breast cancer

My Research Supervision

NameDegreeCommencement DateCompletion DateInstitutionRole
Carley Purcell Doctor of Philosophy Feb-21Aug-25UNSWPrimary Supervisor
Felix KohaneDoctor of Philosophy Mar-22Dec-25UNSWCo-Supervisor
Cerys McCool  Doctor of Philosophy May-21Jan-26UNSWPrimary Supervisor
Sophia Mason   Doctor of Philosophy Mar-22expected Sept 2026 UNSWPrimary Supervisor
Anton Westacott   Doctor of Philosophy May-24expected Nov  2027UNSWPrimary Supervisor
Christina Bui  Doctor of Philosophy May-24expected Dec 2027UNSWPrimary Supervisor