Dr Hamid   Alinejad-Rokny
Associate Lecturer

Dr Hamid Alinejad-Rokny

  • Bachelor: Software Engineering, 2004-2009
  • Master: Artificial Intelligence, 2009-2011.
  • Industry: Data Scientist, 2011-2014.
  • Ph.D: Machine Learning and Computational Biology, UNSW Australia, 2014-2018.
  • Post-Doctoral: Harry Perkins Institute of Medical Research, UWA Australia, 2017-2019.
Engineering
Grad Sch: Biomedical Eng

Dr Rokny joined UNSW on a highly prestigious and competitive UNSW Scientia Program (UNSW Scientia Program aims to attract the best and brightest scientists with outstanding research records in October 2019.  He is now Head of Translational Genomics Data Analytics Lab (TGDA), at the UNSW Graduate School of Biomedical Engineering. He is also Heath Data Analytics Program Leader of AI-enabled Processes (AIP) Research Centre. Dr Rokny received his master degree in Artificial Intelligence/Machine Learning (Ranked 1st) and his Ph.D in Systems Biology and Genomics from UNSW Australia, Dec 2017.
His research focuses on using cutting-edge Systems Biology and Advanced Health Data Analytics techniques in conjunction with genome-wide data to understand the impact of genomic variants on genetic diseases and disorders. Dr Rokny is currently leading multiple international projects (jointly with UWA, Uni Adelaide, SUT, and Texas Biomed) investigating the impacts of non-coding regulatory variants in genetic diseases (in particular neurodevelopmental disorders and breast cancer) through integration of Hi-C, ChIP-seq, RNA-seq, and genomic variants. He is keen to see accurate diagnostic genomic tools implemented into the clinic to improve the health care and genomic-based treatments in the Australian health system.
As a young and early career scientist, Dr Rokny has published 33 publications; he has been able to secure several national and international grants/fellowships. He has received 28 prizes, honours, awards and also was able to secure multiple national and international awards and grants (totally $1.27M) including highly competitive tenure-track UNSW Scientia Program, two NHMRC MERIT awards, two international awards for my work on Autism from the International Quebec Autism Research Training (QART) program and the International Fellowship Fonds de recherche du Québec - Santé (FRQS), two awards from UNSW Cellular Genomics Futures Institute, four external and one internal travel grants to present my research at national and international conferences and workshops. He has also received the best presentation prize in prestigious international conference Human Genome Meeting (HUGO) 2019. Dr Rokny also awarded highly competitive international PhD scholarship from UNSW. Additionally, He has been invited to serve as Keynote Speaker and program committee members of national and international conferences including prestigious International HUGO 2020 (HUGO ECR symposium organization team), Pasteur Institute (invited talk), Harry Perkins Institute of Medical Research.

Mobile
+61 450 166 114
Phone
+61 2 9385 1725
Location
Graduate School of Biomedical Engineering, Level 1, Room 1002, Biological Sciences Building (E26)

Publications

  • Book Chapters | 2021
    Dr Hamid Alinejad-Rokny
    Wang S; Beheshti A; Wang Y; Lu J; Sheng QZ; Elbourn S; Alinejad-Rokny H; Galanis E, 2021, 'Assessment2Vec: Learning Distributed Representations of Assessments to Reduce Marking Workload', in Lecture Notes in Computer Science, Springer International Publishing, pp. 384 - 389, http://dx.doi.org/10.1007/978-3-030-78270-2_68
  • Journal articles | 2021
    Dr Hamid Alinejad-Rokny
    Grapotte M; Saraswat M; Bessière C; Menichelli C; Ramilowski JA; Severin J; Hayashizaki Y; Itoh M; Tagami M; Murata M; Kojima-Ishiyama M; Noma S; Noguchi S; Kasukawa T; Hasegawa A; Suzuki H; Nishiyori-Sueki H; Frith MC; Abugessaisa I; Aitken S; Aken BL; Alam I; Alam T; Alasiri R; Alhendi AMN; Alinejad-Rokny H; Alvarez MJ; Andersson R; Arakawa T; Araki M; Arbel T; Archer J; Archibald AL; Arner E; Arner P; Asai K; Ashoor H; Astrom G; Babina M; Baillie JK; Bajic VB; Bajpai A; Baker S; Baldarelli RM; Balic A; Bansal M; Batagov AO; Batzoglou S; Beckhouse AG; Beltrami AP; Beltrami CA; Bertin N; Bhattacharya S; Bickel PJ; Blake JA; Blanchette M; Bodega B; Bonetti A; Bono H; Bornholdt J; Bttcher M; Bougouffa S; Boyd M; Breda J; Brombacher F; Brown JB; Bult CJ; Burroughs AM; Burt DW; Busch A; Caglio G; Califano A; Cameron CJ; Cannistraci CV; Carbone A; Carlisle AJ; Carninci P; Carter KW; Cesselli D; Chang JC; Chen JC; Chen Y; Chierici M; Christodoulou J; Ciani Y; Clark EL; Coskun M; Dalby M; Dalla E; Daub CO; Davis CA; de Hoon MJL; de Rie D; Denisenko E; Deplancke B; Detmar M; Deviatiiarov R; Di Bernardo D; Diehl AD; Dieterich LC, 2021, 'Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network', Nature Communications, vol. 12, http://dx.doi.org/10.1038/s41467-021-23143-7
    Journal articles | 2021
    Dr Hamid Alinejad-Rokny
    Rajaei P; Jahanian KH; Beheshti A; Band SS; Dehzangi A; Alinejad-rokny H, 2021, 'VIRMOTIF: A user-friendly tool for viral sequence analysis', Genes, vol. 12, pp. 1 - 9, http://dx.doi.org/10.3390/genes12020186
    Journal articles | 2021
    Dr Hamid Alinejad-Rokny
    Shamshirband S; Fathi M; Dehzangi A; Chronopoulos AT; Alinejad-Rokny H, 2021, 'A review on deep learning approaches in healthcare systems: Taxonomies, challenges, and open issues', Journal of Biomedical Informatics, vol. 113, http://dx.doi.org/10.1016/j.jbi.2020.103627
    Journal articles | 2021
    Dr Hamid Alinejad-Rokny
    Heidari R; Akbariqomi M; Asgari Y; Ebrahimi D; Alinejad-Rokny H, 2021, 'A systematic review of long non-coding RNAs with a potential role in breast cancer', Mutation Research - Reviews in Mutation Research, vol. 787, http://dx.doi.org/10.1016/j.mrrev.2021.108375
    Journal articles | 2021
    Dr Hamid Alinejad-Rokny
    Afrasiabi A; Keane JT; Heng JI-T; Palmer EE; Lovell NH; Alinejad-Rokny H, 2021, 'Quantitative neurogenetics: applications in understanding disease.', Biochem Soc Trans, http://dx.doi.org/10.1042/BST20200732
    Journal articles | 2021
    Dr Hamid Alinejad-Rokny
    Mahmoudi MR; Akbarzadeh H; Parvin H; Nejatian S; Rezaie V; Alinejad-Rokny H, 2021, 'Consensus function based on cluster-wise two level clustering', Artificial Intelligence Review, vol. 54, pp. 639 - 665, http://dx.doi.org/10.1007/s10462-020-09862-1
    Journal articles | 2021
    Dr Hamid Alinejad-Rokny
    Voineagu I; Walsh K; Gokool A; Alinejad-Rokny H, 2021, 'NeuroCirc: An Integrative Resource of Circular RNA Expression In the Human Brain.', Bioinformatics, http://dx.doi.org/10.1093/bioinformatics/btab230
    Journal articles | 2020
    Dr Hamid Alinejad-Rokny
    Khakmardan S; Rezvani M; Pouyan AA; Fateh M; Alinejad-Rokny H, 2020, 'MHiC, an integrated user-friendly tool for the identification and visualization of significant interactions in Hi-C data', BMC Genomics, vol. 21, http://dx.doi.org/10.1186/s12864-020-6636-7
    Journal articles | 2020
    Dr Hamid Alinejad-Rokny
    Niu H; Khozouie N; Parvin H; Alinejad-Rokny H; Beheshti A; Mahmoudi MR, 2020, 'An ensemble of locally reliable cluster solutions', Applied Sciences (Switzerland), vol. 10, pp. 1891 - 1891, http://dx.doi.org/10.3390/app10051891
    Journal articles | 2020
    Dr Hamid Alinejad-Rokny
    Bayati M; Rabiee HR; Mehrbod M; Vafaee F; Ebrahimi D; Forrest ARR; Alinejad-Rokny H, 2020, 'CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes', Scientific Reports, vol. 10, pp. 1286, http://dx.doi.org/10.1038/s41598-020-58107-2
    Journal articles | 2020
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H; Heng JIT; Forrest ARR, 2020, 'Brain-Enriched Coding and Long Non-coding RNA Genes Are Overrepresented in Recurrent Neurodevelopmental Disorder CNVs', Cell Reports, vol. 33, http://dx.doi.org/10.1016/j.celrep.2020.108307
    Journal articles | 2020
    Dr Hamid Alinejad-Rokny
    Hosseinpoor M; Parvin H; Nejatian S; Rezaie V; Bagherifard K; Dehzangi A; Beheshti A; Alinejad-Rokny H, 2020, 'Proposing a novel community detection approach to identify co-interacting genomic regions', Mathematical Biosciences and Engineering, vol. 17, pp. 2193 - 2217, http://dx.doi.org/10.3934/mbe.2020117
    Journal articles | 2020
    Dr Hamid Alinejad-Rokny
    Niu H; Xu W; Akbarzadeh H; Parvin H; Beheshti A; Alinejad-Rokny H, 2020, 'Deep feature learnt by conventional deep neural network', Computers and Electrical Engineering, vol. 84, http://dx.doi.org/10.1016/j.compeleceng.2020.106656
    Journal articles | 2020
    Dr Hamid Alinejad-Rokny
    Bahrani P; Minaei-Bidgoli B; Parvin H; Mirzarezaee M; Keshavarz A; Alinejad-Rokny H, 2020, 'User and item profile expansion for dealing with cold start problem', Journal of Intelligent & Fuzzy Systems, vol. 38, pp. 4471 - 4483, http://dx.doi.org/10.3233/jifs-191225
    Journal articles | 2020
    Dr Hamid Alinejad-Rokny
    Afrasiabi A; Alinejad-Rokny H; Lovell N; Xu Z; Ebrahimi D, 2020, 'Insight into the origin of 5’UTR and source of CpG reduction in SARS-CoV-2 genome', , http://dx.doi.org/10.1101/2020.10.23.351353
    Journal articles | 2019
    Dr Hamid Alinejad-Rokny
    Woodward KJ; Stampalia J; Vanyai H; Rijhumal H; Potts K; Taylor F; Peverall J; Grumball T; Sivamoorthy S; Alinejad-Rokny H; Wray J; Whitehouse A; Nagarajan L; Scurlock J; Afchani S; Edwards M; Murch A; Beilby J; Baynam G; Kiraly-Borri C; McKenzie F; Heng JIT, 2019, 'Atypical nested 22q11.2 duplications between LCR22B and LCR22D are associated with neurodevelopmental phenotypes including autism spectrum disorder with incomplete penetrance', Molecular Genetics and Genomic Medicine, vol. 7, http://dx.doi.org/10.1002/mgg3.507
    Journal articles | 2019
    Dr Hamid Alinejad-Rokny
    Masoudiasl I; Vahdat S; Hessam S; Shamshirband S; Alinejad-Rokny H, 2019, 'Proposing an Integrated Method based on Fuzzy Tuning and ICA Techniques to Identify the Most Influencing Features in Breast Cancer', Iranian Red Crescent Medical Journal, vol. 21, http://dx.doi.org/10.5812/ircmj.92077
    Journal articles | 2018
    Dr Hamid Alinejad-Rokny
    Vafaee F; Dashti H; Alinejad-Rokny H, 2018, 'Transcriptomic Data Normalization', Encyclopedia of Bioinformatics and Computational Biology, Elsevier, http://dx.doi.org/10.1016/B978-0-12-809633-8.20209-4
    Journal articles | 2018
    Dr Hamid Alinejad-Rokny
    Kalantari A; Kamsin A; Shamshirband S; Gani A; Alinejad-Rokny H; Chronopoulos AT, 2018, 'Computational intelligence approaches for classification of medical data: State-of-the-art, future challenges and research directions', Neurocomputing, vol. 276, pp. 2 - 22, http://dx.doi.org/10.1016/j.neucom.2017.01.126
    Journal articles | 2018
    Dr Hamid Alinejad-Rokny
    Vafaee F; Diakos C; Kirschner M; Reid G; Michael M; Horvath LISA; Alinejad-Rokny H; Cheng ZJ; Kuncic Z; Clarke S, 2018, 'A data-driven, knowledge-based approach to biomarker discovery: application to circulating microRNA markers of colorectal cancer prognosis', npj Systems Biology and Applications, vol. 4, pp. 20 - 20, http://dx.doi.org/10.1038/s41540-018-0056-1
    Journal articles | 2018
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H; Sadroddiny E; Scaria V, 2018, 'Machine learning and data mining techniques for medical complex data analysis', Neurocomputing, vol. 276, pp. 1, http://dx.doi.org/10.1016/j.neucom.2017.09.027
    Journal articles | 2018
    Dr Hamid Alinejad-Rokny
    Poulton C; Baynam G; Yates C; Alinejad-Rokny H; Williams S; Wright H; Woodward KJ; Sivamoorthy S; Peverall J; Shipman P; Ravine D; Beilby J; Heng JIT, 2018, 'A review of structural brain abnormalities in Pallister-Killian syndrome', Molecular Genetics and Genomic Medicine, vol. 6, pp. 92 - 98, http://dx.doi.org/10.1002/mgg3.351
    Journal articles | 2017
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H, 2017, 'A Method to Avoid Gapped Sequential Patterns in Biological Sequences: Case Study: HIV and Cancer Sequences', Journal of Neuroscience and Neuroengineering, vol. 4, pp. 49 - 53, http://dx.doi.org/10.1166/jnsne.2017.1114
    Journal articles | 2017
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H; Parvin H; Ahangarikiasari H, 2017, 'Pattern Mining and Identifying Co-Expressed Genes from RNA-Seq Dataset Using a New Swarm Intelligence-Based Clustering', Advanced Science, Engineering and Medicine, vol. 9, pp. 36 - 45, http://dx.doi.org/10.1166/asem.2017.1959
    Journal articles | 2017
    Dr Hamid Alinejad-Rokny
    Baghernia A; Pavin H; Mirnabibaboli M; Alinejad-Rokny H, 2017, 'Clustering High-Dimensional Data Stream: A Survey on Subspace Clustering, Projected Clustering on Bioinformatics Applications (Advanced Science, Engineering and Medicine, Vol. 8(9), pp. 749–757 (2016))', Advanced Science, Engineering and Medicine, vol. 9, pp. 617 - 617, http://dx.doi.org/10.1166/asem.2017.2063
    Journal articles | 2017
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H; Parvin H; Ahangarikiasari H, 2017, 'Pattern Mining and Identifying Co-Expressed Genes from RNA-Seq Dataset Using a New Swarm Intelligence-Based Clustering (Advanced Science, Engineering and Medicine, Vol. 9(1), pp. 36–45 (2017))', Advanced Science, Engineering and Medicine, vol. 9, pp. 618 - 618, http://dx.doi.org/10.1166/asem.2017.2064
    Journal articles | 2016
    Dr Hamid Alinejad-Rokny
    Lloyd SB; Lichtfuss M; Amarasena TH; Alcantara S; De Rose R; Tachedjian G; Alinejad-Rokny H; Venturi V; Davenport MP; Winnall WR; Kent SJ, 2016, 'High fidelity simian immunodeficiency virus reverse transcriptase mutants have impaired replication in vitro and in vivo', Virology, vol. 492, pp. 1 - 10, http://dx.doi.org/10.1016/j.virol.2016.02.008
    Journal articles | 2016
    Dr Hamid Alinejad-Rokny
    Baghernia A; Pavin H; Mirnabibaboli M; Alinejad-Rokny H, 2016, 'Clustering High-Dimensional Data Stream: A Survey on Subspace Clustering, Projected Clustering on Bioinformatics Applications', Advanced Science, Engineering and Medicine, vol. 8, pp. 749 - 757, http://dx.doi.org/10.1166/asem.2016.1915
    Journal articles | 2016
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H; Anwar F; Waters SA; Davenport MP; Ebrahimi D, 2016, 'Source of CpG depletion in the HIV-1 genome', Molecular Biology and Evolution, vol. 33, pp. 3205 - 3212, http://dx.doi.org/10.1093/molbev/msw205
    Journal articles | 2016
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H, 2016, 'Proposing on optimized homolographic motif mining strategy based on parallel computing for complex biological networks', Journal of Medical Imaging and Health Informatics, vol. 6, pp. 416 - 424, http://dx.doi.org/10.1166/jmihi.2016.1707
    Journal articles | 2016
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H; Masoud M, 2016, 'A method for hypermutated viral sequences detection in fastq and bam format files', Journal of Medical Imaging and Health Informatics, vol. 6, pp. 1202 - 1208, http://dx.doi.org/10.1166/jmihi.2016.1977
    Journal articles | 2015
    Dr Hamid Alinejad-Rokny
    Parvin H; Mirnabibaboli M; Alinejad-Rokny H, 2015, 'Proposing a classifier ensemble framework based on classifier selection and decision tree', Engineering Applications of Artificial Intelligence, vol. 37, pp. 34 - 42, http://dx.doi.org/10.1016/j.engappai.2014.08.005
    Journal articles | 2015
    Dr Hamid Alinejad-Rokny
    Martyushev AP; Petravic J; Grimm AJ; Alinejad-Rokny H; Gooneratne SL; Reece JC; Cromer D; Kent SJ; Davenport MP, 2015, 'Epitope-specific CD8+ T cell kinetics rather than viral variability determine the timing of immune escape in simian immunodeficiency virus infection', Journal of Immunology, vol. 194, pp. 4112 - 4121, http://dx.doi.org/10.4049/jimmunol.1400793
    Journal articles | 2015
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H; Ebrahimi D, 2015, 'A method to avoid errors associated with the analysis of hypermutated viral sequences by alignment-based methods', Journal of Biomedical Informatics, vol. 58, pp. 220 - 225, http://dx.doi.org/10.1016/j.jbi.2015.10.008
    Journal articles | 2014
    Dr Hamid Alinejad-Rokny
    Ebrahimi D; Alinejad-Rokny H; Davenport MP, 2014, 'Insights into the motif preference of APOBEC3 enzymes', PLoS ONE, vol. 9, http://dx.doi.org/10.1371/journal.pone.0087679
    Journal articles | 2014
    Dr Hamid Alinejad-Rokny
    Gooneratne SL; Alinejad-Rokny H; Ebrahimi D; Bohn PS; Wiseman RW; O'Connor DH; Davenport MP; Kent SJ, 2014, 'Linking pig-tailed macaque major histocompatibility complex class I haplotypes and cytotoxic T lymphocyte escape mutations in simian immunodeficiency virus infection', Journal of Virology, vol. 88, pp. 14310 - 14325, http://dx.doi.org/10.1128/JVI.02428-14
    Journal articles | 2014
    Dr Hamid Alinejad-Rokny
    Minaei-Bidgoli B; Parvin H; Alinejad-Rokny H; Alizadeh H; Punch WF, 2014, 'Effects of resampling method and adaptation on clustering ensemble efficacy', Artificial Intelligence Review, vol. 41, pp. 27 - 48, http://dx.doi.org/10.1007/s10462-011-9295-x
    Journal articles | 2014
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H; Pourshaban H; Orimi AG; Baboli MM, 2014, 'Network motifs detection strategies and using for bioinformatic networks', Journal of Bionanoscience, vol. 8, pp. 353 - 359, http://dx.doi.org/10.1166/jbns.2014.1245
    Journal articles | 2014
    Dr Hamid Alinejad-Rokny
    Mokhtari SM; Alinejad-Rokny H; Jalalifar H, 2014, 'Selection of the best well control system by using fuzzy multiple-attribute decision-making methods', Journal of Applied Statistics, vol. 41, pp. 1105 - 1121, http://dx.doi.org/10.1080/02664763.2013.862218
    Journal articles | 2014
    Dr Hamid Alinejad-Rokny
    Jamnejad I; Heidarzadegan A; Parvin H; Alinejad-Rokny H, 2014, 'Localizing program bugs based on program invariant', International Journal of Computing and Digital Systems, vol. 3, pp. 141 - 150, http://dx.doi.org/10.12785/IJCDS/030208
    Journal articles | 2014
    Dr Hamid Alinejad-Rokny
    Ahmadinia M; Alinejad-Rokny H; Ahangarikiasari H, 2014, 'Data Aggregation in Wireless Sensor Networks Based on Environmental Similarity: A Learning Automata Approach', Journal of Networks, vol. 9, http://dx.doi.org/10.4304/jnw.9.10.2567-2573
    Journal articles | 2014
    Dr Hamid Alinejad-Rokny
    Jamnejad MI; Parvin H; Alinejad-Rokny H; Heidarzadegan A, 2014, 'Proposing a New Method Based on Linear Discriminant Analysis to Build a Robust Classifier', Journal of Bioinformatics and Intelligent Control, vol. 3, pp. 186 - 193, http://dx.doi.org/10.1166/jbic.2014.1086
    Journal articles | 2013
    Dr Hamid Alinejad-Rokny
    Ahmadinia M; Meybodi M; Esnaashari M; Alinejad-Rokny H, 2013, 'Energy-efficient and multi-stage clustering algorithm in wireless sensor networks using cellular learning automata', IETE Journal of Research, vol. 59, pp. 774 - 782, http://dx.doi.org/10.4103/0377-2063.126958
    Journal articles | 2013
    Dr Hamid Alinejad-Rokny
    Parvin H; Minaei-Bidgoli B; Alinejad-Rokny H, 2013, 'A new imbalanced learning and dictions tree method for breast cancer diagnosis', Journal of Bionanoscience, vol. 7, pp. 673 - 678, http://dx.doi.org/10.1166/jbns.2013.1162
    Journal articles | 2013
    Dr Hamid Alinejad-Rokny
    Javanmard R; JeddiSaravi K; Alinejad-Rokny H, 2013, 'Proposed a new method for rules extraction using artificial neural network and artificial immune system in cancer diagnosis', Journal of Bionanoscience, vol. 7, pp. 665 - 672, http://dx.doi.org/10.1166/jbns.2013.1160
    Journal articles | 2013
    Dr Hamid Alinejad-Rokny
    Parvin H; Alinejad-Rokny H; Minaei-Bidgoli B; Parvin S, 2013, 'A new classifier ensemble methodology based on subspace learning', Journal of Experimental and Theoretical Artificial Intelligence, vol. 25, pp. 227 - 250, http://dx.doi.org/10.1080/0952813X.2012.715683
    Journal articles | 2013
    Dr Hamid Alinejad-Rokny
    Parvin H; Minaei-Bidgoli B; Alinejad-Rokny H; Punch WF, 2013, 'Data weighing mechanisms for clustering ensembles', Computers and Electrical Engineering, vol. 39, pp. 1433 - 1450, http://dx.doi.org/10.1016/j.compeleceng.2013.02.004
    Journal articles | 2013
    Dr Hamid Alinejad-Rokny
    Alinejad-Rokny H; Farzaneh MK; Orimi AG; Pedram MM; Kiasari HA, 2013, 'Proposing a new structure for web mining and personalizing web pages', Journal of Emerging Technologies in Web Intelligence, vol. 5, pp. 287 - 295, http://dx.doi.org/10.4304/jetwi.5.3.287-295
    Journal articles | 2013
    Dr Hamid Alinejad-Rokny
    Parvin H; Alinejad-Rokny H; Parvin S, 2013, 'A Classifier Ensemble of Binary Classifier Ensembles', International Journal of Learning Management Systems, vol. 1, pp. 37 - 47, http://dx.doi.org/10.12785/ijlms/010204
    Journal articles | 2013
    Dr Hamid Alinejad-Rokny
    Parvin H; Alinejad-Rokny H; Parvin S, 2013, 'A New Clustering Ensemble Framework', International Journal of Learning Management Systems, vol. 1, pp. 19 - 25, http://dx.doi.org/10.12785/ijlms/010103
    Journal articles | 2012
    Dr Hamid Alinejad-Rokny
    Parvin H; Alinejad-Rokny H; Seyedaghaee NR; Parvin S, 2012, 'A Heuristic Scalable Classifier Ensemble of Binary Classifier Ensembles', Journal of Bioinformatics and Intelligent Control, vol. 1, pp. 163 - 170, http://dx.doi.org/10.1166/jbic.2013.1016
    Journal articles | 2012
    Dr Hamid Alinejad-Rokny
    Shirvani MH; Alinejad-Rokny H, 2012, 'Performance Assessment of Feasible Scheduling Multiprocessor Tasks Solutions by using DEA FDH method', Information Sciences Letters, vol. 1, pp. 61 - 66, http://dx.doi.org/10.12785/isl/010106
    Journal articles | 2012
    Dr Hamid Alinejad-Rokny
    Sadeghi M; Alinejad-Rokny H, 2012, 'On covering of products of T-generalized state machines', Mathematical Sciences Letters, vol. 1, pp. 43 - 52, http://dx.doi.org/10.12785/msl/010106
    Journal articles | 2012
    Dr Hamid Alinejad-Rokny
    Alizadeh H; Alinejad-Rokny H; Parvin H; Sohrabi B, 2012, 'A new inference engine: Surface Matching Degree', Applied Mathematical Modelling, http://dx.doi.org/10.1016/j.apm.2012.02.027
    Journal articles | 2012
    Dr Hamid Alinejad-Rokny
    Esmaeili L; Minaei-Bidgoli B; Alinejad-Rokny H; Nasiri M, 2012, 'Hybrid recommender system for joining virtual communities', Research Journal of Applied Sciences, Engineering and Technology, vol. 4, pp. 500 - 509
    Journal articles | 2011
    Dr Hamid Alinejad-Rokny
    Minaei-Bidgoli B; Parvin H; Alizadeh H; Alinejad-Rokny H; Punch WF, 2011, 'Effects of resampling method and adaptation on clustering ensemble efficacy', Artificial Intelligence Review, pp. 1 - 22, http://dx.doi.org/10.1007/s10462-011-9295-x
    Journal articles | 2011
    Dr Hamid Alinejad-Rokny
    Parvin H; Alinejad-Rokny H; Asadi M, 2011, 'An ensemble based approach for feature selection', Australian Journal of Basic and Applied Sciences, vol. 5, pp. 1153 - 1163
    Journal articles |
    Dr Hamid Alinejad-Rokny
    Rezaie N; Bayati M; Tahaei MS; Hamidi M; Khorasani S; Lovell NH; Breen J; Rabiee HR; Alinejad-Rokny H, 'Somatic point mutations are enriched in long non-coding RNAs with possible regulatory function in breast cancer', , http://dx.doi.org/10.1101/2021.07.19.453012
  • Conference Abstracts | 2015
    Dr Hamid Alinejad-Rokny
    Gooneratne S; Alinejad-Rokny H; Mohammadi D; Bohn P; Wiseman R; O'Connor D; Davenport M; Kent S, 2015, 'LINKING PIGTAIL MACAQUE MHC I HAPLOTYPES AND CTL ESCAPE MUTATIONS IN SIV INFECTION', in JOURNAL OF MEDICAL PRIMATOLOGY, WILEY-BLACKWELL, Vol. 44, pp. 335 - 335, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000361966000094&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Dr Hamid Alinejad-Rokny
    Dr Hamid Alinejad-Rokny
    Dr Hamid Alinejad-Rokny
    Dr Hamid Alinejad-Rokny
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    Dr Hamid Alinejad-Rokny
    Dr Hamid Alinejad-Rokny
    Dr Hamid Alinejad-Rokny
    Dr Hamid Alinejad-Rokny
    Dr Hamid Alinejad-Rokny

Awards

•    Honorary Lecturer Fellow, University of Macquarie, Oct 2020-current
•    Awarded Travel grant from Institute for Research in Fundamental Sciences as invited speaker, Feb 2020
•    Health Data Analytics Program Leader, AI-enabled Processes (AIP) Research Centre, Dec 2019-curent
•    Awarded MBSJ2019 (42nd Annual Meeting of the Molecular Biology) Travel Award, Japan, Dec 2019
•    Prize RIKEN-HUGO award for best oral presentation in HUGO 2019, South Korea, Oct 2019
•    Awarded highly competitive tenure-track UNSW Scientia Fellowship Program in Aug 2019
•    Offered, Vice-chancellor fellowship grant from RMIT Australia, May 2019 (declined in favour of UNSW Scientia Program).
•    Awarded HDR conference support grant from UNSW Sydney, Jul 2015
•    Awarded Travel grant from University of Tehran as invited speaker, Tehran, Feb 2015
•    Prize, Ph.D scholarship from UNSW Sydney, Mar 2013
•    Prize, Top-up scholarship from the faculty of medicine, UNSW Sydney, Mar 2013
•    Prize, Ph.D Scholarship from the University of Newcastle, Australia, Jul 2012
•    Prize, Travel award from Faculty of Engineering, The University Newcastle, Australia, Jul 2012
•    Awarded Government scholarship for Bachelor and Master degrees, (tuition fee waived)
•    Dean’s award, for being Top Student during Master’s degree, Science and Research University of Tehran, 2010
•    Honour, Ranked 1 (of 700) with the overall GPA (19.31/20) in Master’s degree (Top Student), Science and Research University of Tehran, Sep 2010
•    Prize in a National Mathematics Olympiad, ranked the fourth top person among 10,000 people.

Grants

  • MERIT award for NHMRC Investigator funding (CI-A), offered, 2020-2021.
  • NSW Cancer Council, "Single-cell analyses of interacting cells in circulating tumour cell clusters", 2020-2021.
  • UNSW Cellular Genomics Futures Institute grant, UNSW Sydney, "CRISPRi screening of regulatory regions using snRNA-seq readout and integration with Hi-C data", 2020-2021. 
  • UNSW Cellular Genomics Futures Institute grant, UNSW Sydney, "decoding 3D genome architecture in individual single-cells to establish molecular mechanisms of gene regulation in cancer", 2020-2021. 
  • Government of Western Australia department of health, clinical excellence, MERIT award for NHMRC Investigator ‘near-miss’ funding, 2020-2021.
  • Academic Start-up Funding (ASUF), Faculty of Engineering, UNSW Sydney, 2019-2023.
  • UNSW Scientia Development and Collaboration Support Fund, UNSW Sydney, 2019-2023.
  • Quebec Autism Research Training (QART) program, 2019-2021.
  • Fonds de recherche du Québec - Santé (FRQS) research grant, 2019-2021.
  • Government of Western Australia, Department of Health, clinical excellence, MERIT award for NHMRC ‘near-miss’ funding, 2018-2019.
  • Vice-Chancellor's Research Fellowship Fund, RMIT University, 2018, offered.

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