Dr Hani Kim

Dr Hani Kim

Conjoint Lecturer

2018 – 2022

PhD in Computational Biology, School of Mathematics and Statistics, Australia (Supervision: A/Prof Pengyi Yang)

The University of Sydney

2014 – 2015

Research Assistant in molecular biology

Seoul National University

2011 – 2014

MSc in Biological Sciences, School of Biological Sciences, South Korea

Seoul National University

2008 – 2011

BSc, Biomedical Sciences, School of Biomedical Sciences, UK

Imperial College London

 

Medicine & Health
School of Clinical Medicine

Hani is a Senior Research Officer at the Swarbrick Lab and a conjoint lecturer at UNSW. She completed her undergraduate and graduate training at Imperial College London (UK) and Seoul National University (South Korea), followed by a PhD in Computational Biology at The University of Sydney. Her current research focuses on the development of state-of-the-art computational tools and analytics framework for the integration of high-dimensional single-cell and spatial multi-omics that propels discovery of new biological insight and clinically relevant solutions for breast cancer. She has developed a wide range of bespoke computational software including CiteFuse, Cepo, PhosR, and Maxima.

Location
384 Victoria Street, Darlinghurst NSW 2010
  • Journal articles | 2022
    Xiao D; Kim HJ; Pang I; Yang P, 2022, 'Functional analysis of the stable phosphoproteome reveals cancer vulnerabilities.', Bioinformatics, 38, pp. 1956 - 1963, http://dx.doi.org/10.1093/bioinformatics/btac015
    Journal articles | 2021
    Kim HJ; Wang K; Chen C; Lin Y; Tam PPL; Lin DM; Yang JYH; Yang P, 2021, 'Uncovering cell identity through differential stability with Cepo.', Nat Comput Sci, 1, pp. 784 - 790, http://dx.doi.org/10.1038/s43588-021-00172-2
    Journal articles | 2020
    Kim HJ; Lin Y; Geddes TA; Yang JYH; Yang P, 2020, 'CiteFuse enables multi-modal analysis of CITE-seq data.', Bioinformatics, 36, pp. 4137 - 4143, http://dx.doi.org/10.1093/bioinformatics/btaa282
    Journal articles | 2020
    Lin Y; Cao Y; Kim HJ; Salim A; Speed TP; Lin DM; Yang P; Yang JYH, 2020, 'scClassify: sample size estimation and multiscale classification of cells using single and multiple reference', Molecular Systems Biology, 16, http://dx.doi.org/10.15252/msb.20199389
  • Preprints | 2021
    Kim HJ; Wang K; Chen C; Lin Y; Tam PPL; Lin D; Yang JYH; Yang P, 2021, Cepo uncovers cell identity through differential stability, , http://dx.doi.org/10.1101/2021.01.10.426138
    Preprints | 2020
    Kim HJ; Kim T; Hoffman N; Xiao D; James D; Humphrey S; Yang P, 2020, PhosR enables processing and functional analysis of phosphoproteomic data, , http://dx.doi.org/10.1101/2020.08.31.276329
    Preprints | 2019
    Kim HJ; Lin Y; Geddes T; Yang J; Yang P, 2019, CiteFuse enables multi-modal analysis of CITE-seq data, , http://dx.doi.org/10.1101/854299

01/07/2024-06/12/2024

Australian Academy of Science: Theo Murphy Initiatives Amplify Activities ($14,800 AUD) (CIA: Hani Jieun Kim)

01/02/2023-31/01/2025

MRFF Stem Cell Therapies Mission: Purification and cryopreservation of an allogeneic stem cell-derived photoreceptor cell product. ($515,340 AUD) (CID: Hani Jieun Kim)

 

2023

ABACBS Outstanding PhD Thesis Award from the Australian Bioinformatics And Computational Biology Society (ABACBS)

2023

Best Oral Presentation Award at the Sydney Bioinformatics Research Symposium

2023

CMRI Travel Award ($2000) from the Children’s Medical Research Institute

2018 – 2022

Postgraduate Research Scholarship in Computational Biology from The University of Sydney, Australia

2019 – 2022

CMRI PhD Top-up Scholarship from the Children’s Medical Research Institute

2022

Best Oral Presentation Award at the Sydney Bioinformatics Research Symposium

2021

Best Student Poster Presentation Award ($250) at the Oz Single Cell Conference

2021

Winter School Scholarship Recipient ($190) from the Australian Mathematical Sciences Institute (AMSI)

2021

2nd Best Student Oral Presentation Award ($150) at the Australasian Society for Stem Cell Research Symposium (ASSCR)

2020

2020

USYD Postgraduate Research Support Scheme ($500)

Student Oral Presentation Award ($250) at the 25th Annual Lorne Proteomics Symposium

2019

2nd Best Oral Presentation Award ($120) at the Australian Computational Biology and Bioinformatics (COMBINE) Student Society Symposium

2019

Winning Team of Oz Single Cell Challenge 2019 ($1000) at Oz Single Cell Conference

2019

Travel Award for EMBL Australia PhD Course at the University of Tasmania, Hobart

2018

2nd Best Poster Presentation Award ($120) at the COMBINE Symposium

Presentations

2024

Melbourne Integrative Genomics (MIG) Seminar Series, invited oral presentation

2024

UNSW BioMedical Machine Learning Laboratory, invited oral presentation

2023

Korea University (South Korea), invited oral presentation

2023

Seoul National University (South Korea), invited oral presentation

2023

The Australian Bioinformatics And Computational Biology Society (ABACBS), selected oral presentatio

2023

The Australasian Society for Stem Cell Research (ASSCR) Symposium, selected poster presentation

2023

Westmead Research and Innovation Conference Symposium, selected oral presentation

2023

Sydney Bioinformatics Research Symposium (SBRS), selected oral presentation

2023

International Society for Stem Cell Research (ISSCR) (Boston), selected poster presentation

2022

The Australian Bioinformatics And Computational Biology Society (ABACBS), selected poster presentation

2022

Australian Society of Immunology (ASI) Hackathon, selected participant

2022

OzSingleCell 2022 conference, selected poster presentation

2022

Sydney Bioinformatics Research Symposium (SBRS), selected oral presentation

2021

OzSingleCell 2021 conference (virtual), selected poster presentation

2021

AMSI Winter School on Statistical Data Science (virtual), selected oral presentation

2021

International Society for Stem Cell Research (ISSCR) (virtual), selected oral presentation

2021

Charles Perkins Centre (CPC) BioDomain Seminar, invited oral presentation

2021

The Australasian Society for Stem Cell Research (ASSCR) Symposium, selected oral presentation

2021

Keystone Symposia (KS) “Single Cell Biology” (virtual), selected e-poster presentation

2020

The Australian Bioinformatics And Computational Biology Society (ABACBS) (virtual), selected poster presentation

2020

Charles Perkins Centre (CPC) EMCR Symposium (virtual), selected poster presentation

2020

A/Prof Hagen Tigner Laboratory at Weill Cornell Medicine, New York, USA (virtual), invited oral presentation

2020

OzSingleCell 2020 Episode on New technologies: Exploring the complexities of genetic regulation in single cells (virtual), invited oral presentation

2020

Cold Spring Harbor Laboratory (CSHL) “Epigenetics & Chromatin” (virtual), selected poster presentation

2020

2020

28th Conference on Intelligent Systems for Molecular Biology (ISMB) (virtual), selected poster presentation

25th Annual Lorne Proteomics Symposium in Lorne, Australia, selected oral presentation

2019

The Australian Bioinformatics And Computational Biology Society (ABACBS) in Sydney, Australia, selected poster presentation

2019

COMBINE Symposium in Sydney, Australia, selected oral presentation

2019

10x Genomics User Guide Meeting in Sydney, Australia, invited oral presentation

2019

EMBL Australia PhD Course in Tasmania, Australia, selected poster presentation

2018

COMBINE Symposium in Melbourne, Australia, selected poster presentation

2018

Garvan Signalling Symposium in Sydney, Australia, selected poster presentation

 

Professional services

2024 Co-chair and committee member of the 2024 ABACBS EMCR Hackathon.
2024 Postdoctoral co-representative and committee member of the 2024 ABACBS Conference.
2022-current Committee member of the ABACBS Postdoc Sub-committee.
2022,2023 Co-chair of sessions at ABACBS National Conference.
2022-2023 Co-chair of sessions at ABACBS National Conference in 2022, 2023.Co-chair of the ABACBS National Seminar Series and Sydney Precision Data Science Statistical Seminar Series.
2022 Co-chair of the Early Career Research Committee of the Sydney Precision Data Science centre.
2021 Committee member of 2021 COMBINE Symposium, a student-run Australian organisation for researchers in computational biology and bioinformatics.

 

My Research Supervision

  • 2021 - current: Carissa Chen PhD Candidate (co-supervision)