Barton K; Ferguson JM; Deveson IW; Falcinelli SD; James KS; Kirchherr J; Ramirez C; Gay CL; Hammond JM; Bevear B; Carswell SL; Margolis DM; Smith MA; Adimora AA; Archin NM, 2023, 'HIVepsilon-seq—scalable characterization of intact persistent proviral HIV reservoirs in women', Journal of Virology, 97, http://dx.doi.org/10.1128/jvi.00705-23
Journal articles | 2022
Kong BY; Carter C; Nowak AK; Hovey E; Lwin Z; Haghighi N; Gan HK; Sim HW; Ziegler DS; Barton K; Parkinson J; Leonard R; Khasraw M; Foote M, 2022, 'Barriers and potential solutions to international collaboration in neuro-oncology clinical trials: Challenges from the Australian perspective', Asia-Pacific Journal of Clinical Oncology, 18, pp. 259 - 266, http://dx.doi.org/10.1111/ajco.13606
Journal articles | 2021
Chao KH; Barton K; Palmer S; Lanfear R, 2021, 'SangeranalyseR: Simple and Interactive Processing of Sanger Sequencing Data in R', Genome Biology and Evolution, 13, http://dx.doi.org/10.1093/gbe/evab028
Journal articles | 2021
Du Q; Smith GC; Luu PL; Ferguson JM; Armstrong NJ; Caldon CE; Campbell EM; Nair SS; Zotenko E; Gould CM; Buckley M; Chia KM; Portman N; Lim E; Kaczorowski D; Chan CL; Barton K; Deveson IW; Smith MA; Powell JE; Skvortsova K; Stirzaker C; Achinger-Kawecka J; Clark SJ, 2021, 'DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity', Cell Reports, 36, http://dx.doi.org/10.1016/j.celrep.2021.109722
Journal articles | 2021
Riaz N; Leung P; Barton K; Smith MA; Carswell S; Bull R; Lloyd AR; Rodrigo C, 2021, 'Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants', BMC Genomics, 22, pp. 148, http://dx.doi.org/10.1186/s12864-021-07460-1
Journal articles | 2020
Adikari TN; Riaz N; Sigera C; Leung P; Valencia BM; Barton K; Smith MA; Bull RA; Li H; Luciani F; Weeratunga P; Thein TL; Lim VWX; Leo YS; Rajapakse S; Fink K; Lloyd AR; Fernando D; Rodrigo C; Valencia Arroyo BM, 2020, 'Single molecule, near full-length genome sequencing of dengue virus', Scientific Reports, 10, pp. 18196, http://dx.doi.org/10.1038/s41598-020-75374-1
Journal articles | 2020
Chao K-H; Barton K; Palmer S; Lanfear R, 2020, 'sangeranalyseR: simple and interactive analysis of Sanger sequencing data in R', , http://dx.doi.org/10.1101/2020.05.18.102459
Journal articles | 2020
Du Q; Smith G; Luu PL; Ferguson J; Armstrong N; Caldon E; Campbell E; Nair S; Zotenko E; Gould C; Buckley M; Kaczorowski D; Barton K; Deveson I; Smith M; Powell J; Skvortsova K; Stirzaker C; Achinger-Kawecka J; Clark S, 2020, 'DNA methylation is required to maintain DNA replication timing precision and 3D genome integrity', , http://dx.doi.org/10.1101/2020.10.15.338855
Journal articles | 2020
Field MA; Rosen BD; Dudchenko O; Chan EKF; Minoche AE; Edwards RJ; Barton K; Lyons RJ; Tuipulotu DE; Hayes VM; Omer AD; Colaric Z; Keilwagen J; Skvortsova K; Bogdanovic O; Smith MA; Aiden EL; Smith TPL; Zammit RA; Ballard JWO, 2020, 'Canfam-GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C', GigaScience, 9, http://dx.doi.org/10.1093/gigascience/giaa027
Journal articles | 2020
Ruggieri A; Naumenko S; Smith MA; Iannibelli E; Blasevich F; Bragato C; Gibertini S; Barton K; Vorgerd M; Marcus K; Wang P; Maggi L; Mantegazza R; Dowling JJ; Kley RA; Mora M; Minassian BA, 2020, 'Multiomic elucidation of a coding 99-mer repeat-expansion skeletal muscle disease', Acta Neuropathologica, 140, pp. 231 - 235, http://dx.doi.org/10.1007/s00401-020-02164-4
Journal articles | 2020
Smith MA; Ersavas T; Ferguson JM; Liu H; Lucas MC; Begik O; Bojarski L; Barton K; Novoa EM, 2020, 'Molecular barcoding of native RNAs using nanopore sequencing and deep learning', Genome Research, 30, pp. 1345 - 1353, http://dx.doi.org/10.1101/GR.260836.120
Journal articles | 2019
Corbett MA; Kroes T; Veneziano L; Bennett MF; Florian R; Schneider AL; Coppola A; Licchetta L; Franceschetti S; Suppa A; Wenger A; Mei D; Pendziwiat M; Kaya S; Delledonne M; Straussberg R; Xumerle L; Regan B; Crompton D; van Rootselaar AF; Correll A; Catford R; Bisulli F; Chakraborty S; Baldassari S; Tinuper P; Barton K; Carswell S; Smith M; Berardelli A; Carroll R; Gardner A; Friend KL; Blatt I; Iacomino M; Di Bonaventura C; Striano S; Buratti J; Keren B; Nava C; Forlani S; Rudolf G; Hirsch E; Leguern E; Labauge P; Balestrini S; Sander JW; Afawi Z; Helbig I; Ishiura H; Tsuji S; Sisodiya SM; Casari G; Sadleir LG; van Coller R; Tijssen MAJ; Klein KM; van den Maagdenberg AMJM; Zara F; Guerrini R; Berkovic SF; Pippucci T; Canafoglia L; Bahlo M; Striano P; Scheffer IE; Brancati F; Depienne C; Gecz J, 2019, 'Intronic ATTTC repeat expansions in STARD7 in familial adult myoclonic epilepsy linked to chromosome 2', Nature Communications, 10, http://dx.doi.org/10.1038/s41467-019-12671-y
Journal articles | 2019
Deveson IW; Madala BS; Blackburn J; Barker C; Wong T; Barton KM; Smith MA; Watkins DN; Mercer TR, 2019, 'Chiral DNA sequences as commutable controls for clinical genomics', Nature Communications, 10, http://dx.doi.org/10.1038/s41467-019-09272-0
Journal articles | 2019
Hamm JN; Erdmann S; Eloe-Fadrosh EA; Angeloni A; Zhong L; Brownlee C; Williams TJ; Barton K; Carswell S; Smith MA; Brazendale S; Hancock AM; Allen MA; Raftery MJ; Cavicchioli R, 2019, 'Unexpected host dependency of Antarctic Nanohaloarchaeota', Proceedings of the National Academy of Sciences of the United States of America, 116, pp. 14661 - 14670, http://dx.doi.org/10.1073/pnas.1905179116
Journal articles | 2019
Hardwick SA; Bassett SD; Kaczorowski D; Blackburn J; Barton K; Bartonicek N; Carswell SL; Tilgner HU; Loy C; Halliday G; Mercer TR; Smith MA; Mattick JS, 2019, 'Targeted, high-resolution RNA sequencing of non-coding genomic regions associated with neuropsychiatric functions', Frontiers in Genetics, 10, pp. 309, http://dx.doi.org/10.3389/fgene.2019.00309
Journal articles | 2019
Singh M; Al-Eryani G; Carswell S; Ferguson JM; Blackburn J; Barton K; Roden D; Luciani F; Giang Phan T; Junankar S; Jackson K; Goodnow CC; Smith MA; Swarbrick A, 2019, 'High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes', Nature Communications, 10, http://dx.doi.org/10.1038/s41467-019-11049-4
Journal articles | 2018
Deveson I; Madala BS; Blackburn J; Barker C; Wong T; Barton K; Smith M; Watkins N; Mercer T, 2018, 'Chiral DNA sequences as commutable reference standards for clinical genomics', BIORXIV, http://dx.doi.org/10.1101/404285
Journal articles | 2018
Singh M; Al-Eryani G; Carswell S; Ferguson J; Blackburn J; Barton K; Roden D; Luciani F; Phan T; Junankar S; Jackson K; Goodnow C; Smith M; Swarbrick A, 2018, 'High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes', , http://dx.doi.org/10.1101/424945
Journal articles | 2017
Fromentin R; Massanella M; Vandergeeten C; Barton K; Hiener B; Chiu WW; Looney D; Ramgopal M; Richman DD; Trautmann L; Palmer S; Chomont N, 2017, 'In vivo massive expansion of a T-cell clone carrying a defective HIV genome: implication for the measurement of the HIV reservoir', Journal of Virus Eradication, 3, pp. 21 - 22, http://dx.doi.org/10.1016/s2055-6640(20)30544-6
Journal articles | 2017
Hiener B; Horsburgh BA; Eden JS; Barton K; Schlub TE; Lee E; von Stockenstrom S; Odevall L; Milush JM; Liegler T; Sinclair E; Hoh R; Boritz EA; Douek D; Fromentin R; Chomont N; Deeks SG; Hecht FM; Palmer S, 2017, 'Identification of Genetically Intact HIV-1 Proviruses in Specific CD4+ T Cells from Effectively Treated Participants', Cell Reports, 21, pp. 813 - 822, http://dx.doi.org/10.1016/j.celrep.2017.09.081
Journal articles | 2017
Winckelmann A; Barton K; Hiener B; Schlub TE; Shao W; Rasmussen TA; Østergaard L; Søgaard OS; Tolstrup M; Palmer S, 2017, 'Romidepsin-induced HIV-1 viremia during effective antiretroviral therapy contains identical viral sequences with few deleterious mutations', AIDS, 31, pp. 771 - 779, http://dx.doi.org/10.1097/QAD.0000000000001400
Barton K; Hiener B; Winckelmann A; Rasmussen TA; Shao W; Byth K; Lanfear R; Solomon A; McMahon J; Harrington S; Buzon M; Lichterfeld M; Denton PW; Olesen R; Østergaard L; Tolstrup M; Lewin SR; Søgaard OS; Palmer S, 2016, 'Broad activation of latent HIV-1 in vivo', Nature Communications, 7, http://dx.doi.org/10.1038/ncomms12731
Journal articles | 2016
Barton K; Winckelmann A; Palmer S, 2016, 'HIV-1 Reservoirs During Suppressive Therapy', Trends in Microbiology, 24, pp. 345 - 355, http://dx.doi.org/10.1016/j.tim.2016.01.006
Journal articles | 2016
Barton KM; Palmer SE, 2016, 'How to Define the Latent Reservoir: Tools of the Trade', Current HIV/AIDS Reports, 13, pp. 77 - 84, http://dx.doi.org/10.1007/s11904-016-0304-1
Journal articles | 2015
Barton K; Hiener B; Winckelmann A; Rasmussen TA; Tolstrup M; Shao W; Olesen R; Denton PW; Solomon A; Østergaard L; Lewin SR; Søgaard OS; Palmer S, 2015, 'Peripheral blood CD4 + T cells and intestinal lamina propria mononuclear cells contribute to viremia following an analytical treatment interruption: a follow-up analysis of the panobinostat trial', Journal of Virus Eradication, 1, pp. 30 - 30, http://dx.doi.org/10.1016/s2055-6640(20)31372-8
Journal articles | 2014
Barton KM; Archin NM; Keedy KS; Espeseth AS; Zhang YL; Gale J; Wagner FF; Holson EB; Margolis DM, 2014, 'Selective HDAC inhibition for the disruption of latent HIV-1 infection', PLoS ONE, 9, http://dx.doi.org/10.1371/journal.pone.0102684
Journal articles | 2013
Barton K; Margolis D, 2013, 'Selective targeting of the repressive transcription factors YY1 and cMyc to disrupt quiescent human immunodeficiency viruses', AIDS Research and Human Retroviruses, 29, pp. 289 - 298, http://dx.doi.org/10.1089/aid.2012.0227
Journal articles | 2013
Barton KM; Burch BD; Soriano-Sarabia N; Margolis DM, 2013, 'Erratum: Prospects for Treatment of Latent HIV (Clinical Pharmacology and Therapeutics (2013) 93 (46-56) DOI: 10.1038/clpt.2012.202)', Clinical Pharmacology and Therapeutics, 93, pp. 366, http://dx.doi.org/10.1038/clpt.2013.19
Journal articles | 2013
Barton KM; Burch BD; Soriano-Sarabia N; Margolis DM, 2013, 'Prospects for treatment of latent HIV', Clinical Pharmacology and Therapeutics, 93, pp. 46 - 56, http://dx.doi.org/10.1038/clpt.2012.202
Journal articles | 2011
Russell ES; Kwiek JJ; Keys J; Barton K; Mwapasa V; Montefiori DC; Meshnick SR; Swanstrom R, 2011, 'The genetic bottleneck in vertical transmission of subtype C HIV-1 is not driven by selection of especially neutralization-resistant virus from the maternal viral population', Journal of Virology, 85, pp. 8253 - 8262, http://dx.doi.org/10.1128/JVI.00197-11
Journal articles | 2008
Barton KM; Levine EM, 2008, 'Expression patterns and cell cycle profiles of PCNA, MCM6, cyclin D1, cyclin A2, cyclin B1, and phosphorylated histone H3 in the developing mouse retina', Developmental Dynamics, 237, pp. 672 - 682, http://dx.doi.org/10.1002/dvdy.21449
Working Papers | 2020
Du Q; Smith G; Luu PL; Ferguson J; Armstrong N; Caldon E; Campbell E; Nair S; Zotenko E; Gould C; Buckley M; Kaczorowski D; Barton K; Deveson I; Smith M; Powell J; Skvortsova K; Stirzaker C; Achinger-Kawecka J; Clark S, 2020, DNA methylation is required to maintain DNA replication timing precision and 3D genome integrity, http://dx.doi.org10.1101/2020.10.15.338855
Working Papers | 2019
Smith M; Ersavas T; Ferguson J; Liu H; Lucas M; Begik O; Bojarski L; Barton K; Novoa EM, 2019, Barcoding and demultiplexing Oxford Nanopore native RNA sequencing reads with deep residual learning, http://dx.doi.org10.1101/864322
Preprints | 2019
Hardwick SA; Bassett SD; Kaczorowski D; Blackburn J; Barton K; Bartonicek N; Carswell SL; Tilgner HU; Loy C; Halliday G; Mercer TR; Smith MA; Mattick JS, 2019, TARGETED, HIGH-RESOLUTION RNA SEQUENCING OF NON-CODING GENOMIC REGIONS ASSOCIATED WITH NEUROPSYCHIATRIC FUNCTIONS, http://dx.doi.org/10.1101/539882
