Dr Matthew Joseph Lee
Senior Lecturer

Dr Matthew Joseph Lee

Engineering
Sch: Civil & Environmental Eng

Senior Research Associate in the School of Civil and Environmental Engineering's Water Research Centre (WRC)

Mobile
+61 404188074
Phone
(+61 2) 9385 TBA
Location
Vallentine Annexe (H22) Level 1, Room VA127 Kensington Campus

Publications

  • Book Chapters | 2019
    Dr Matthew Joseph Lee
    Hu M; Lee M; Zhong L; Manefield MJ, 2019, 'Method Development for DNA and Proteome SIP Analysis of Activated Sludge for Anaerobic Dichloromethane Biodegradation', in Stable Isotope Probing, United States, pp. 207 - 219, http://dx.doi.org/10.1007/978-1-4939-9721-3_16
    Book Chapters | 2018
    Dr Matthew Joseph Lee
    Cheema S; Zhang M; Labine-Romain M; Lal B; Lavania M; Lee M; Li X; Lauro FM; Beckmann S; Manefield M, 2018, 'Neutral red: The synthetic phenazine full of electrochemical surprises', in Encyclopedia of Interfacial Chemistry: Surface Science and Electrochemistry, pp. 382 - 391, http://dx.doi.org/10.1016/B978-0-12-409547-2.14291-X
    Book Chapters | 2017
    Dr Matthew Joseph Lee
    Manefield M; Lee M; Koenig J, 2017, 'The nature and relevance of solvent stress in microbes and mechanisms of tolerance.', in Chénard C; Lauro FM (ed.), Microbial Ecology in Extreme Environments., Springer, pp. 201 - 213, http://dx.doi.org/10.1007/978-3-319-51686-8_9
    Book Chapters | 2017
    Dr Matthew Joseph Lee
    Manefield M; Alfan-Guzman R; Lee M, 2017, 'Anaerobic bioreactors for the treatment of chlorinated hydrocarbons', in Thangadurai D; Sangeetha J (ed.), Industrial Biotechnology: Sustainable Production and Bioresource Utilization, CRC Press Taylor & Francis Group, pp. 421 - 452
  • Journal articles | 2021
    Dr Matthew Joseph Lee
    Sun J; Jennepalli S; Lee M; O'Carroll DM; Åkermark B; Manefield MJ; Das B; Kumar N, 2021, 'Removal of per- And polyfluoroalkyl substances (PFAS) from water by ceric(iv) ammonium nitrate', RSC Advances, vol. 11, pp. 17642 - 17645, http://dx.doi.org/10.1039/d1ra02635f
    Journal articles | 2021
    Dr Matthew Joseph Lee
    Holland SI; Ertan H; Montgomery K; Manefield MJ; Lee M, 2021, 'Novel dichloromethane-fermenting bacteria in the Peptococcaceae family', ISME Journal, vol. 15, pp. 1709 - 1721, http://dx.doi.org/10.1038/s41396-020-00881-y
    Journal articles | 2020
    Dr Matthew Joseph Lee
    O'Carroll DM; Jeffries TC; Lee MJ; Le ST; Yeung A; Wallace S; Battye N; Patch DJ; Manefield MJ; Weber KP, 2020, 'Developing a roadmap to determine per- and polyfluoroalkyl substances-microbial population interactions', Science of the Total Environment, vol. 712, pp. 135994, http://dx.doi.org/10.1016/j.scitotenv.2019.135994
    Journal articles | 2019
    Dr Matthew Joseph Lee
    Holland SI; Edwards RJ; Ertan H; Wong YK; Russell TL; Deshpande NP; Manefield MJ; Lee M, 2019, 'Whole genome sequencing of a novel, dichloromethane-fermenting Peptococcaceae from an enrichment culture', PeerJ, vol. 2019, http://dx.doi.org/10.7717/peerj.7775
    Journal articles | 2019
    Dr Matthew Joseph Lee
    Kronen M; Lee M; Jones ZL; Manefield MJ, 2019, 'Reductive metabolism of the important atmospheric gas isoprene by homoacetogens', ISME Journal, vol. 13, pp. 1168 - 1182, http://dx.doi.org/10.1038/s41396-018-0338-z
    Journal articles | 2019
    Dr Matthew Joseph Lee
    Heckel B; Phillips E; Edwards E; Sherwood Lollar B; Elsner M; Manefield MJ; Lee M, 2019, 'Reductive Dehalogenation of Trichloromethane by Two Different Dehalobacter restrictus Strains Reveal Opposing Dual Element Isotope Effects', Environmental Science and Technology, vol. 53, pp. 2332 - 2343, http://dx.doi.org/10.1021/acs.est.8b03717
    Journal articles | 2019
    Dr Matthew Joseph Lee
    Webster J; Lee M; Gurba LW; Manefield M; Thomas T, 2019, 'The effect of oxidative treatment on soluble compounds from Australian coal', Fuel, vol. 257, pp. 116071 - 116071, http://dx.doi.org/10.1016/j.fuel.2019.116071
    Journal articles | 2019
    Dr Matthew Joseph Lee
    Low A; Zhao S; Rogers MJ; Zemb O; Lee M; He J; Manefield M, 2019, 'Isolation, characterization and bioaugmentation of an acidotolerant 1,2-dichloroethane respiring Desulfitobacterium species from a low pH aquifer', FEMS Microbiology Ecology, vol. 95, http://dx.doi.org/10.1093/femsec/fiz055
    Journal articles | 2019
    Dr Matthew Joseph Lee
    Beckmann S; Luk AWS; Gutierrez-Zamora ML; Chong NHH; Thomas T; Lee M; Manefield M, 2019, 'Long-term succession in a coal seam microbiome during in situ biostimulation of coalbed-methane generation', ISME Journal, vol. 13, pp. 632 - 650, http://dx.doi.org/10.1038/s41396-018-0296-5
    Journal articles | 2018
    Dr Matthew Joseph Lee
    Chau ATT; Lee M; Adrian L; Manefield MJ, 2018, 'Syntrophic partners enhance growth and respiratory dehalogenation of hexachlorobenzene by Dehalococcoides mccartyi strain CBDB1', Frontiers in Microbiology, vol. 9, http://dx.doi.org/10.3389/fmicb.2018.01927
    Journal articles | 2018
    Dr Matthew Joseph Lee
    Jugder BE; Payne KAP; Fisher K; Bohl S; Lebhar H; Manefield M; Lee MJ; Leys D; Marquis C, 2018, 'Heterologous Production and Purification of a Functional Chloroform Reductive Dehalogenase', ACS Chemical Biology, http://dx.doi.org/10.1021/acschembio.7b00846
    Journal articles | 2017
    Dr Matthew Joseph Lee
    Munro JE; Kimyon Ö; Rich DJ; Koenig J; Tang S; Low A; Lee M; Manefield M; Coleman NV, 2017, 'Co-occurrence of genes for aerobic and anaerobic biodegradation of dichloroethane in organochlorine-contaminated groundwater', FEMS Microbiology Ecology, vol. 93, http://dx.doi.org/10.1093/femsec/fix133
    Journal articles | 2017
    Dr Matthew Joseph Lee
    Alfán-Guzmán R; Ertan H; Manefield M; Lee M, 2017, 'Isolation and characterization of Dehalobacter sp. strain TeCB1 including identification of TcbA: A novel tetra- and trichlorobenzene reductive Dehalogenase', Frontiers in Microbiology, vol. 8, http://dx.doi.org/10.3389/fmicb.2017.00558
    Journal articles | 2017
    Dr Matthew Joseph Lee
    Alfán-Guzmán R; Ertan H; Manefield M; Lee M, 2017, 'Genome sequence of Dehalobacter sp. strain TeCB1, able to respire chlorinated benzenes', Genome Announcements, vol. 5, http://dx.doi.org/10.1128/genomeA.01681-16
    Journal articles | 2017
    Dr Matthew Joseph Lee
    Jugder BE; Bohl S; Lebhar H; Healey RD; Manefield M; Marquis CP; Lee M, 2017, 'A bacterial chloroform reductive dehalogenase: purification and biochemical characterization', Microbial Biotechnology, vol. 10, pp. 1640 - 1648, http://dx.doi.org/10.1111/1751-7915.12745
    Journal articles | 2016
    Dr Matthew Joseph Lee
    Wong YK; Holland SI; Ertan H; Manefield M; Lee M, 2016, 'Isolation and characterization of Dehalobacter sp. strain UNSWDHB capable of chloroform and chlorinated ethane respiration', Environmental microbiology, vol. 18, pp. 3092 - 3105, http://dx.doi.org/10.1111/1462-2920.13287
    Journal articles | 2016
    Dr Matthew Joseph Lee
    Patterson BM; Lee M; Bastow TP; Wilson JT; Donn MJ; Furness A; Goodwin B; Manefield M, 2016, 'Concentration effects on biotic and abiotic processes in the removal of 1,1,2-trichloroethane and vinyl chloride using carbon-amended ZVI', Journal of Contaminant Hydrology, vol. 188, pp. 1 - 11, http://dx.doi.org/10.1016/j.jconhyd.2016.02.004
    Journal articles | 2016
    Dr Matthew Joseph Lee
    Beckmann S; Welte C; Li X; Oo YM; Kroeninger L; Heo Y; Zhang M; Ribeiro D; Lee M; Bhadbhade M; Marjo CE; Seidel J; Deppenmeier U; Manefield M, 2016, 'Novel phenazine crystals enable direct electron transfer to methanogens in anaerobic digestion by redox potential modulation', Energy and Environmental Science, vol. 9, pp. 644 - 655, http://dx.doi.org/10.1039/c5ee03085d
    Journal articles | 2016
    Dr Matthew Joseph Lee
    Jugder BE; Ertan H; Wong YK; Braidy N; Manefield M; Marquis CP; Lee M, 2016, 'Genomic, transcriptomic and proteomic analyses of dehalobacter UNSWDHB in response to chloroform', Environmental Microbiology Reports, vol. 8, pp. 814 - 824, http://dx.doi.org/10.1111/1758-2229.12444
    Journal articles | 2016
    Dr Matthew Joseph Lee
    Jugder BE; Ertan H; Bohl S; Lee M; Marquis CP; Manefield M, 2016, 'Organohalide respiring bacteria and reductive dehalogenases: Key tools in organohalide bioremediation', Frontiers in Microbiology, vol. 7, http://dx.doi.org/10.3389/fmicb.2016.00249
    Journal articles | 2016
    Dr Matthew Joseph Lee
    Koenig JC; Boparai HK; Lee MJ; O'Carroll DM; Barnes RJ; Manefield MJ, 2016, 'Particles and enzymes: Combining nanoscale zero valent iron and organochlorine respiring bacteria for the detoxification of chloroethane mixtures', Journal of Hazardous Materials, vol. 308, pp. 106 - 112, http://dx.doi.org/10.1016/j.jhazmat.2015.12.036
    Journal articles | 2016
    Dr Matthew Joseph Lee
    Kimyon O; Uluturk ZI; Nizalapur S; Lee M; Kutty SK; Beckmann S; Kumar N; Manefield M, 2016, 'N-Acetylglucosamine Inhibits LuxR, LasR and CviR Based Quorum Sensing Regulated Gene Expression Levels', FRONTIERS IN MICROBIOLOGY, vol. 7, http://dx.doi.org/10.3389/fmicb.2016.01313
    Journal articles | 2015
    Dr Matthew Joseph Lee
    Gutierrez-Zamora ML; Lee M; Manefield M; Thomas T, 2015, 'Biotransformation of coal linked to nitrification', International Journal of Coal Geology, vol. 137, pp. 136 - 141, http://dx.doi.org/10.1016/j.coal.2014.12.001
    Journal articles | 2015
    Dr Matthew Joseph Lee
    Lee M; Wells E; Wong YK; Koenig J; Adrian L; Richnow HH; Manefield M, 2015, 'Relative contributions of dehalobacter and zerovalent iron in the degradation of chlorinated methanes', Environmental Science and Technology, vol. 49, pp. 4481 - 4489, http://dx.doi.org/10.1021/es5052364
    Journal articles | 2015
    Dr Matthew Joseph Lee
    Jugder BE; Ertan H; Lee M; Manefield M; Marquis CP, 2015, 'Reductive Dehalogenases Come of Age in Biological Destruction of Organohalides', Trends in Biotechnology, vol. 33, pp. 595 - 610, http://dx.doi.org/10.1016/j.tibtech.2015.07.004
    Journal articles | 2015
    Dr Matthew Joseph Lee
    Lee M; Marquis C; Judger B-E; Manefield M, 2015, 'Anaerobic microorganisms and bioremediation of organohalide pollution', MICROBIOLOGY AUSTRALIA, vol. 36, pp. 125 - 128, http://dx.doi.org/10.1071/MA15044
    Journal articles | 2015
    Dr Matthew Joseph Lee
    Koenig J; Lee M; Manefield M, 2015, 'Aliphatic organochlorine degradation in subsurface environments', Reviews in Environmental Science and Biotechnology, vol. 14, pp. 49 - 71, http://dx.doi.org/10.1007/s11157-014-9345-3
    Journal articles | 2013
    Dr Matthew Joseph Lee
    Deshpande NP; Wong YK; Manefield M; Wilkins MR; Lee M, 2013, 'Genome Sequence of Dehalobacter UNSWDHB, a Chloroform-Dechlorinating Bacterium.', Genome Announc, vol. 1, http://dx.doi.org/10.1128/genomeA.00720-13
    Journal articles | 2013
    Dr Matthew Joseph Lee
    Deshpande NP; Wong YK; Manefield M; Wilkins MR; Lee M, 2013, 'Genome sequence of Dehalobacter UNSWDHB, a chloroform-dechlorinating bacterium', Genome Announcements, vol. 1, http://dx.doi.org/10.1128/genomeA.e00720-13
    Journal articles | 2012
    Dr Matthew Joseph Lee
    Lee M; Low AB; Zemb ON; Koenig J; Michaelsen A; Manefield MJ, 2012, 'Complete chloroform dechlorination by organochlorine respiration and fermentation', Environmental Microbiology, vol. 14, pp. 883 - 894, http://dx.doi.org/10.1111/j.1462-2920.2011.02656.x
    Journal articles | 2012
    Dr Matthew Joseph Lee
    Zemb ON; Lee M; Gutierrez-Zamora M; Hamelin J; Coupland KG; Hazrin-Chong N; Taleb I; Manefield MJ, 2012, 'Improvement of RNA-SIP by pyrosequencing to identify putative 4-n-nonylphenol degraders in activated sludge', Water Research, vol. 46, pp. 601 - 610, http://dx.doi.org/10.1016/j.watres.2011.10.047
    Journal articles | 2012
    Dr Matthew Joseph Lee
    Koenig JC; Lee M; Manefield MJ, 2012, 'Successful microcosm demonstration of a strategy for biodegradation of a mixture of carbon tetrachloride and perchloroethene harnessing sulfate reducing and dehalorespiring bacteria', Journal of Hazardous Materials, vol. 219-220, pp. 169 - 175, http://dx.doi.org/10.1016/j.jhazmat.2012.03.076
    Journal articles | 2011
    Dr Matthew Joseph Lee
    Lee M; Atkins C; Pate J, 2011, 'Synthesis, transport and accumulation of quinolizidine alkaloids in Lupinus albus L. and L. angustifolius', Journal of Experimental Botany, vol. 58, pp. 935 - 946, http://dx.doi.org/10.1093/jxb/erl254
    Journal articles | 2011
    Dr Matthew Joseph Lee
    Penesyan A; Tebben J; Lee M; Thomas T; Kjelleberg S; Harder T; Egan S, 2011, 'Identification of the antibacterial compound produced by the marine epiphytic bacterium Pseudovibrio sp. D323 and related sponge-associated bacteria.', Marine Drugs, vol. 9, pp. 1391 - 1402, http://dx.doi.org/10.3390/md9081391
    Journal articles | 2010
    Dr Matthew Joseph Lee
    Yee LH; Aagaard V; Johnstone A; Lee M; Kjelleberg S; Manefield MJ, 2010, 'Development of a treatment solution for reductive dechlorination of hexachloro-1,3-butadiene in vadose zone soil', Biodegradation, vol. 21, pp. 947 - 956, http://dx.doi.org/10.1007/s10532-010-9354-z
    Journal articles | 2010
    Dr Matthew Joseph Lee
    Lee M; Cord-Ruwisch R; Manefield MJ, 2010, 'A process for the purification of organochlorine contaminated activated carbon: Sequential solvent purging and reductive dechlorination', Water Research, vol. 44, pp. 1580 - 1590, http://dx.doi.org/10.1016/j.watres.2009.11.004
    Journal articles | 2010
    Dr Matthew Joseph Lee
    Zemb ON; Lee M; Low AB; Manefield MJ, 2010, 'Reactive iron barriers: a niche enabling microbial dehalorespiration of 1,2-dichloroethane', Applied Microbiology and Biotechnology, vol. 88, pp. 319 - 325, http://dx.doi.org/10.1007/s00253-010-2740-y
    Journal articles | 2009
    Dr Matthew Joseph Lee
    Watanabe K; Manefield MJ; Lee M; Kouzuma A, 2009, 'Electron shuttles in biotechnology', Current Opinion in Biotechnology, vol. 20, pp. 633 - 641, http://dx.doi.org/10.1016/j.copbio.2009.09.006
    Journal articles | 2008
    Dr Matthew Joseph Lee
    James DL; Cord-Ruwisch R; Schleheck DF; Lee M; Manefield MJ, 2008, 'Cyanocobalamin enables activated sludge bacteria to dechlorinate hexachloro-1,3-butadiene to non-chlorinated gases', Bioremediation Journal, vol. 12, pp. 177 - 184, http://dx.doi.org/10.1080/10889860802477085
    Journal articles | 2007
    Dr Matthew Joseph Lee
    Low A; Schleheck DF; Aagaard V; Khou M; Manefield MJ; Lee M, 2007, 'Options for in situ remediation of soil contaminated with a mixture of perchlorinated compounds', Bioremediation Journal, vol. 11, pp. 113 - 124, http://dx.doi.org/10.1080/10889860701548556
  • Conference Presentations | 2019
    Dr Matthew Joseph Lee
    O'Carroll D; Lee MJ; Song T; anna Y; Manefield M; Webber K; Wallace S; Nick B; Thomas J, 2019, 'Interrelationships between PFAS and in situ microbial communities at an AFFF field site', presented at AMERICAN CHEMICAL SOCIETY, Orlando, 31 March 2019 - 03 April 2019, https://tpa.acs.org/abstract/acsnm257-3129228/interrelationships-between-pfas-and-in-situ-microbial-communities-at-an-afff-field-site
    Conference Abstracts | 2017
    Dr Matthew Joseph Lee
    Jugder BE; Payne KAP; Fisher K; Manefield M; Lee M; Les D; Marquis CM, 2017, 'Heterologous production of functional chloroform reductive dehalogenase', in The FASEB Journal, Federation of American Society of Experimental Biology (FASEB), Chicago, US, Vol. 31, pp. 548 - 552, presented at American Society for Biochemistry and Molecular Biology Annual Meeting, Chicago, US, http://dx.doi.org/10.1021/acschembio.7b00846

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