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Dr Minh Tran

Postdoctoral Fellow
Medicine & Health
School of Clinical Medicine
  • Journal articles | 2024
    Patrick R; Naval-Sanchez M; Deshpande N; Huang Y; Zhang J; Chen X; Yang Y; Tiwari K; Esmaeili M; Tran M; Mohamed AR; Wang B; Xia D; Ma J; Bayliss J; Wong K; Hun ML; Sun X; Cao B; Cottle DL; Catterall T; Barzilai-Tutsch H; Troskie R-L; Chen Z; Wise AF; Saini S; Soe YM; Kumari S; Sweet MJ; Thomas HE; Smyth IM; Fletcher AL; Knoblich K; Watt MJ; Alhomrani M; Alsanie W; Quinn KM; Merson TD; Chidgey AP; Ricardo SD; Yu D; Jardé T; Cheetham SW; Marcelle C; Nilsson SK; Nguyen Q; White MD; Nefzger CM, 2024, 'The activity of early-life gene regulatory elements is hijacked in aging through pervasive AP-1-linked chromatin opening', Cell Metabolism, 36, pp. 1858 - 1881.e23, http://dx.doi.org/10.1016/j.cmet.2024.06.006
    Journal articles | 2024
    Tan E; Tran M; Rademaker M; Lin FPY, 2024, 'Bridging AI development with clinical relevance—A scoping review of skin cancer models since CLEAR Derm. Where to next?', Australasian Journal of Dermatology, 65, pp. e56 - e58, http://dx.doi.org/10.1111/ajd.14207
    Journal articles | 2023
    Pham D; Tan X; Balderson B; Xu J; Grice LF; Yoon S; Willis EF; Tran M; Lam PY; Raghubar A; Kalita-de Croft P; Lakhani S; Vukovic J; Ruitenberg MJ; Nguyen QH, 2023, 'Robust mapping of spatiotemporal trajectories and cell–cell interactions in healthy and diseased tissues', Nature Communications, 14, pp. 7739, http://dx.doi.org/10.1038/s41467-023-43120-6
    Journal articles | 2023
    Shojaei M; Shamshirian A; Monkman J; Grice L; Tran M; Tan CW; Teo SM; Rodrigues Rossi G; McCulloch TR; Nalos M; Raei M; Razavi A; Ghasemian R; Gheibi M; Roozbeh F; Sly PD; Spann KM; Chew KY; Zhu Y; Xia Y; Wells TJ; Senegaglia AC; Kuniyoshi CL; Franck CL; dos Santos AFR; Noronha LD; Motamen S; Valadan R; Amjadi O; Gogna R; Madan E; Alizadeh-Navaei R; Lamperti L; Zuñiga F; Nova-Lamperti E; Labarca G; Knippenberg B; Herwanto V; Wang Y; Phu A; Chew T; Kwan T; Kim K; Teoh S; Pelaia TM; Kuan WS; Jee Y; Iredell J; O’Byrne K; Fraser JF; Davis MJ; Belz GT; Warkiani ME; Gallo CS; Souza-Fonseca-Guimaraes F; Nguyen Q; Mclean A; Kulasinghe A; Short KR; Tang B, 2023, 'IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study', Frontiers in Immunology, 13, http://dx.doi.org/10.3389/fimmu.2022.1060438
    Journal articles | 2023
    Tan X; Grice LF; Tran M; Mulay O; Monkman J; Blick T; Vo T; Almeida AC; da Silva Motta J; de Moura KF; Machado‐Souza C; Souza‐Fonseca‐Guimaraes P; Baena CP; de Noronha L; Guimaraes FSF; Luu HN; Drennon T; Williams S; Stern J; Uytingco C; Pan L; Nam A; Cooper C; Short K; Belz GT; Souza‐Fonseca‐Guimaraes F; Kulasinghe A; Nguyen Q, 2023, 'A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues', Immunology, 170, pp. 401 - 418, http://dx.doi.org/10.1111/imm.13679
    Journal articles | 2023
    Thomson E; Tran M; Robevska G; Ayers K; van der Bergen J; Bhaskaran PG; Haan E; Cereghini S; Vash-Margita A; Margetts M; Hensley A; Nguyen Q; Sinclair A; Koopman P; Pelosi E, 2023, 'Functional genomics analysis identifies loss of HNF1B function as a cause of Mayer–Rokitansky–Küster–Hauser syndrome', Human Molecular Genetics, 32, pp. 1032 - 1047, http://dx.doi.org/10.1093/hmg/ddac262
    Journal articles | 2023
    Tu WJ; Melino M; Dunn J; McCuaig RD; Bielefeldt-Ohmann H; Tsimbalyuk S; Forwood JK; Ahuja T; Vandermeide J; Tan X; Tran M; Nguyen Q; Zhang L; Nam A; Pan L; Liang Y; Smith C; Lineburg K; Nguyen TH; Sng JDJ; Tong ZWM; Chew KY; Short KR; Le Grand R; Seddiki N; Rao S, 2023, 'In vivo inhibition of nuclear ACE2 translocation protects against SARS-CoV-2 replication and lung damage through epigenetic imprinting', Nature Communications, 14, pp. 3680, http://dx.doi.org/10.1038/s41467-023-39341-4
    Journal articles | 2022
    Naval-Sanchez M; Deshpande N; Tran M; Zhang J; Alhomrani M; Alsanie W; Nguyen Q; Nefzger CM, 2022, 'Benchmarking of ATAC Sequencing Data From BGI’s Low-Cost DNBSEQ-G400 Instrument for Identification of Open and Occupied Chromatin Regions', Frontiers in Molecular Biosciences, 9, pp. 900323, http://dx.doi.org/10.3389/fmolb.2022.900323
    Journal articles | 2022
    Tran M; Yoon S; Teoh M; Andersen S; Lam PY; Purdue BW; Raghubar A; Hanson SJ; Devitt K; Jones K; Walters S; Monkman J; Kulasinghe A; Tuong ZK; Soyer HP; Frazer IH; Nguyen Q, 2022, 'A robust experimental and computational analysis framework at multiple resolutions, modalities and coverages', Frontiers in Immunology, 13, pp. 911873, http://dx.doi.org/10.3389/fimmu.2022.911873
    Journal articles | 2020
    Tan X; Su A; Tran M; Nguyen Q, 2020, 'SpaCell: integrating tissue morphology and spatial gene expression to predict disease cells', Bioinformatics, 36, pp. 2293 - 2294, http://dx.doi.org/10.1093/bioinformatics/btz914
    Journal articles | 2018
    Ngoc MT; Park DC; Tran M, 2018, 'Centroid Neural Network with Pairwise Constraints for Semi-supervised Learning', Neural Processing Letters, 48, pp. 1721 - 1747, http://dx.doi.org/10.1007/s11063-018-9794-8
  • Conference Papers | 2020
    Tran M; Su A; Lee H; Cruz R; Pflieger L; Dean A; Nguyen Q; Ji H; Rhodes T, 2020, '665 Spatial single-cell analysis of colorectal cancer tumour using multiplexed imaging mass cytometry', in Regular and young investigator award abstracts, BMJ Publishing Group Ltd, presented at 35th Anniversary Annual Meeting (SITC 2020), http://dx.doi.org/10.1136/jitc-2020-sitc2020.0665