Professor Ruiting   Lan
Professor

Professor Ruiting Lan

Science
Biotech & Biomolecular Science

About me

I am a Professor of Medical Microbiology in the School of Biotechnology and Biomolecular Sciences at UNSW Sydney where I teach medical microbiology to science and medical students. I grew up in China and did my undergraduate degree there. I completed my PhD at University of Sydney in 1992 and did my postdoctoral training also at the University of Sydney. I was appointed as a Senior Lecturer at UNSW in 2002 and promoted to Professor in 2018.

Research Contribution

My research addresses how pathogens arise, evolve and cause diseases, and how to identify and track these pathogens. I work on bacterial pathogens that are important to human health, with primary interests in gastrointestinal tract pathogens (pathogenic Escherichia coli, Shigella, Salmonella, Vibrio cholerae) and respiratory tract pathogens (Bordetella pertussis). In general terms, our work focuses on the arms race between human intervention (vaccination and/or antibiotics) and the pathogen response.

In B. pertussis we have shown that epidemic B. pertussis in Australia has undergone changes at genomic and proteomic levels in response to selection from vaccine. In Shigella, we have shown that S. flexneri epidemics in China were due to the emergence and spread of a novel clone that carried both a novel O antigen and multidrug resistance. In Salmonella, we have shown that whole genome sequencing has the power to radically improve outbreak investigation and public health intervention. I invented the the core genome concept which is central to the understanding of bacterial evolution.

We developed the multilevel genome typing (MGT) scheme for Salmonella Typhimurium and host the MGT database at https://mgtdb.unsw.edu.au/.

For more information about us please visit my lab website http://www.lanlab.unsw.edu.au/.

Selected Publications

  • Lam, C.,..., R. Lan. (2014) Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia. Emerging Infect Dis 20:626-633.
  • Octavia, S., ..., R. Lan. (2015) Delineating community outbreaks of Salmonella enterica serovar Typhimurium using whole genome sequencing. J Clin Microbiol 53:1063-1071.
  • Jones, M., ..., R. Lan (2017). Population and evolutionary dynamics of Shiga-toxin producing Escherichia coli O157 in a beef herd: A longitudinal study. Environ Microbiol 19: 1836-1844.
  • Xu, Z. …, R. Lan. (2019) Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China. Emerg Microbes Infect 8:461-470.
  • Luu, L.D.W., ..., R. Lan (2020). Surfaceome analysis of Australian epidemic Bordetella pertussis reveals potential vaccine antigens. Vaccine 38: 539-548.
  • Payne, M., ..., R. Lan (2020). Multilevel genome typing: genomics guided scalable resolution typing of microbial pathogens. Eurosurveillance 25: 1900519.

Professional Experience

  • Postdoc/Research fellow, University of Sydney

Honours & Awards

  • Guest Professor, Chinese Centre for Disease Control and Prevention
  • Division Chair, the Australia Society for Microbiology
  • Fellow of Australian Society for Microbiology
Phone
(+61 2) 9385 2095
Location
3115, L3 East, Bioscience South E26

Publications

  • Book Chapters | 2018
    Professor Ruiting Lan
    Lan R; Octavia S, 2018, 'Vaccine driven selection and the changing molecular epidemiology of Bordetella pertussis', in Rohani P; Scarpino S (ed.), Pertussis Epidemiology, Immunology, and Evolution, Oxford University Press, USA, pp. 166 - 180
    Book Chapters | 2015
    Professor Ruiting Lan
    Octavia S; Lan R, 2015, 'Chapter 65 Shigella and Shigellosis Genetics, Epidemiology and Pathogenesis', in Molecular Medical Microbiology, pp. 1147 - 1168, http://dx.doi.org/10.1016/b978-0-12-397169-2.00065-2
    Book Chapters | 2014
    Professor Ruiting Lan
    Octavia S; Lan R, 2014, 'The Family Enterobacteriaceae', in DeLong EF; Lory S; Stackebrandt E; Thompson F (ed.), The Prokaryotes, Springer, pp. 225 - 286, http://dx.doi.org/10.1007/978-3-642-38922-1_167
    Book Chapters | 2014
    Professor Ruiting Lan
    Octavia S; Lan R, 2014, 'Shigella and Shigellosis: Genetics, Epidemiology and Pathogenesis', in Tang Y-W; Sussman M; Liu D; Poxton I; Schwartzman J (ed.), Molecular Medical Microbiology, Three-Volume Set, Academic Press, pp. 1147 - 1168, http://dx.doi.org/10.1016/B978-0-12-397169-2.00065-2
    Book Chapters | 2007
    Professor Ruiting Lan
    Lan R; Reeves PR, 2007, 'Amplified Fragment Length Polymorphism Analysis of Salmonella enterica', in Schatten H; Eisenstark A (ed.), Methods in Molecular Biology, vol. 394: Salmonella: Methods and Protocols, Humana Press, Totawa, Netherlands, pp. 119 - 132
    Book Chapters | 2006
    Professor Ruiting Lan
    Lan R; Reeves PR, 2006, 'Evolution of Enteric Pathogens', in Seifert HS; DiRita VJ (ed.), Evolution of Microbial Pathogens, ASM Press, Washington, DC, pp. 273, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000278637000016&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a
  • Journal articles | 2021
    Professor Ruiting Lan
    Luo Y; Wang H; Liang J; Qian H; Ye J; Chen L; Yang X; Chen Z; Wang F; Octavia S; Payne M; Song X; Jiang J; Jin D; Lan R, 2021, 'Population Structure and Multidrug Resistance of Non-O1/Non-O139 Vibrio cholerae in Freshwater Rivers in Zhejiang, China', Microbial Ecology, http://dx.doi.org/10.1007/s00248-020-01645-z
    Journal articles | 2021
    Professor Ruiting Lan
    Fu S; Yang Q; Wang Q; Pang B; Lan R; Wei D; Qu B; Liu Y, 2021, 'Continuous genomic surveillance monitored the in vivo evolutionary trajectories of vibrio parahaemolyticus and identified a new virulent genotype', mSystems, vol. 6, http://dx.doi.org/10.1128/mSystems.01254-20
    Journal articles | 2021
    Professor Ruiting Lan
    Zhu W; Yang J; Lu S; Lan R; Jin D; Luo XL; Pu J; Wu S; Xu J, 2021, 'Beta- and Novel Delta-Coronaviruses Are Identified from Wild Animals in the Qinghai-Tibetan Plateau, China', Virologica Sinica, vol. 36, pp. 402 - 411, http://dx.doi.org/10.1007/s12250-020-00325-z
    Journal articles | 2021
    Professor Ruiting Lan
    Payne M; Octavia S; Luu LDW; Sotomayor-Castillo C; Wang Q; Tay ACY; Sintchenko V; Tanaka MM; Lan R, 2021, 'Enhancing genomics-based outbreak detection of endemic Salmonella enterica serovar Typhimurium using dynamic thresholds', Microbial genomics, vol. 7, http://dx.doi.org/10.1099/mgen.0.000310
    Journal articles | 2021
    Professor Ruiting Lan
    Luo L; Payne M; Kaur S; Hu D; Cheney L; Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, 2021, 'Elucidation of global and national genomic epidemiology of Salmonella enterica serovar Enteritidis through multilevel genome typing.', Microb Genom, vol. 7, http://dx.doi.org/10.1099/mgen.0.000605
    Journal articles | 2021
    Professor Ruiting Lan
    Wang X; Zhou H; Du P; Lan R; Chen D; Dong A; Lin X; Qiu X; Xu S; Ji X; Li M; Hou X; Sun L; Li D; Han L; Li Z, 2021, 'Genomic epidemiology of Corynebacterium striatum from three regions of China: an emerging national nosocomial epidemic', Journal of Hospital Infection, vol. 110, pp. 67 - 75, http://dx.doi.org/10.1016/j.jhin.2020.10.005
    Journal articles | 2021
    Professor Ruiting Lan
    Liu L; Song L; Deng R; Lan R; Jin W; Tran Van Nhieu G; Cao H; Liu Q; Xiao Y; Li X; Meng G; Ren Z, 2021, 'Citrobacter freundii Activation of NLRP3 Inflammasome via the Type VI Secretion System', The Journal of infectious diseases, vol. 223, pp. 2174 - 2185, http://dx.doi.org/10.1093/infdis/jiaa692
    Journal articles | 2021
    Professor Ruiting Lan
    Luu LDW; Zhong L; Kaur S; Raftery MJ; Lan R, 2021, 'Comparative Phosphoproteomics of Classical Bordetellae Elucidates the Potential Role of Serine, Threonine and Tyrosine Phosphorylation in Bordetella Biology and Virulence', Frontiers in Cellular and Infection Microbiology, vol. 11, pp. 660280, http://dx.doi.org/10.3389/fcimb.2021.660280
    Journal articles | 2021
    Professor Ruiting Lan
    Safarchi A; Saedi S; Octavia S; Sedaghatpour M; Bolourchi N; Tay CY; Lamichhane B; Shahcheraghi F; Lan R, 2021, 'Evolutionary genomics of recent clinical Bordetella pertussis isolates from Iran: wide circulation of multiple ptxP3 lineages and report of the first ptxP3 filamentous hemagglutinin-negative B. pertussis', Infection, Genetics and Evolution, vol. 93, pp. 104970, http://dx.doi.org/10.1016/j.meegid.2021.104970
    Journal articles | 2021
    Professor Ruiting Lan
    Yu K; Huang Z; Li Y; Fu Q; Lin L; Wu S; Dai H; Cai H; Xiao Y; Lan R; Wang D, 2021, 'Establishment and Application of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry for Detection of Shewanella Genus', Frontiers in Microbiology, vol. 12, pp. 625821, http://dx.doi.org/10.3389/fmicb.2021.625821
    Journal articles | 2021
    Professor Ruiting Lan
    Luu LDW; Payne M; Zhang X; Luo L; Lan R, 2021, 'Development and comparison of novel multiple cross displacement amplification (MCDA) assays with other nucleic acid amplification methods for SARS-CoV-2 detection', Scientific Reports, vol. 11, pp. 1873, http://dx.doi.org/10.1038/s41598-021-81518-8
    Journal articles | 2020
    Professor Ruiting Lan
    Luo Y; Huang C; Ye J; Octavia S; Wang H; Dunbar SA; Jin D; Tang YW; Lan R, 2020, 'Comparison of xMAP Salmonella Serotyping Assay With Traditional Serotyping and Discordance Resolution by Whole Genome Sequencing', Frontiers in Cellular and Infection Microbiology, vol. 10, http://dx.doi.org/10.3389/fcimb.2020.00452
    Journal articles | 2020
    Professor Ruiting Lan
    Gong L; Tang N; Chen D; Sun K; Lan R; Zhang W; Zhou H; Yuan M; Chen X; Zhao X; Che J; Bai X; Zhang Y; Xu H; Walsh TR; Lu J; Xu J; Li J; Feng J, 2020, 'A Nosocomial Respiratory Infection Outbreak of Carbapenem-Resistant Escherichia coli ST131 With Multiple Transmissible blaKPC–2 Carrying Plasmids', Frontiers in Microbiology, vol. 11, http://dx.doi.org/10.3389/fmicb.2020.02068
    Journal articles | 2020
    Professor Ruiting Lan
    Fu S; Wei D; Yang Q; Xie G; Pang B; Wang Y; Lan R; Wang Q; Dong X; Zhang X; Huang J; Feng J; Liu Y, 2020, 'Horizontal plasmid transfer promotes the dissemination of Asian acute hepatopancreatic necrosis disease and provides a novel mechanism for genetic exchange and environmental adaptation', mSystems, vol. 5, http://dx.doi.org/10.1128/mSystems.00799-19
    Journal articles | 2020
    Professor Ruiting Lan
    Fu S; Yang Q; He F; Lan R; Hao J; Ni P; Liu Y; Li R, 2020, 'National safety survey of animal-use commercial probiotics and their spillover effects from farm to humans: An emerging threat to public health', Clinical Infectious Diseases, vol. 70, pp. 2386 - 2395, http://dx.doi.org/10.1093/cid/ciz642
    Journal articles | 2020
    Professor Ruiting Lan
    Liu L; Qin L; Hao S; Lan R; Xu B; Guo Y; Jiang R; Sun H; Chen X; Lv X; Xu J; Zhao C, 2020, 'Lineage, antimicrobial resistance and virulence of citrobacter spp', Pathogens, vol. 9, http://dx.doi.org/10.3390/pathogens9030195
    Journal articles | 2020
    Professor Ruiting Lan
    Liu F; Chen S; Luu LDW; Lee SA; Tay ACY; Wu R; Riordan SM; Lan R; Liu L; Zhang L, 2020, 'Analysis of complete Campylobacter concisus genomes identifies genomospecies features, secretion systems and novel plasmids and their association with severe ulcerative colitis', Microbial Genomics, http://dx.doi.org/10.1099/mgen.0.000457
    Journal articles | 2020
    Professor Ruiting Lan
    Payne M; Kaur S; Wang Q; Hennessy D; Luo L; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2020, 'Multilevel genome typing: Genomics-guided scalable resolution typing of microbial pathogens', Eurosurveillance, vol. 25, http://dx.doi.org/10.2807/1560-7917.ES.2020.25.20.1900519
    Journal articles | 2020
    Professor Ruiting Lan
    Luu LDW; Octavia S; Aitken C; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2020, 'Surfaceome analysis of Australian epidemic Bordetella pertussis reveals potential vaccine antigens', Vaccine, vol. 38, pp. 539 - 548, http://dx.doi.org/10.1016/j.vaccine.2019.10.062
    Journal articles | 2020
    Professor Ruiting Lan
    Loo SL; Ong A; Kyaw W; Thibaut LM; Lan R; Tanaka MM, 2020, 'Nonsynonymous Polymorphism Counts in Bacterial Genomes: a Comparative Examination', Applied and Environmental Microbiology, vol. 87, pp. 1 - 16, http://dx.doi.org/10.1128/AEM.02002-20
    Journal articles | 2020
    Professor Ruiting Lan
    Zhang X; Payne M; Wang Q; Sintchenko V; Lan R, 2020, 'Highly Sensitive and Specific Detection and Serotyping of Five Prevalent Salmonella Serovars by Multiple Cross-Displacement Amplification', Journal of Molecular Diagnostics, vol. 22, pp. 708 - 719, http://dx.doi.org/10.1016/j.jmoldx.2020.02.006
    Journal articles | 2020
    Professor Ruiting Lan
    Jayasundara D; Lee E; Octavia S; Lan R; Tanaka MM; Wood JG, 2020, 'Emergence of pertactin-deficient pertussis strains in Australia can be explained by models of vaccine escape', Epidemics, vol. 31, pp. 100388, http://dx.doi.org/10.1016/j.epidem.2020.100388
    Journal articles | 2020
    Professor Ruiting Lan
    Sy BM; Lan R; Tree JJ, 2020, 'Early termination of the Shiga toxin transcript generates a regulatory small RNA', Proceedings of the National Academy of Sciences of the United States of America, vol. 117, pp. 25055 - 25065, http://dx.doi.org/10.1073/pnas.2006730117
    Journal articles | 2019
    Professor Ruiting Lan
    Fu S; Hao J; Yang Q; Lan R; Wang Y; Ye S; Liu Y; Li R, 2019, 'Long-distance transmission of pathogenic Vibrio species by migratory waterbirds: a potential threat to the public health', Scientific Reports, vol. 9, http://dx.doi.org/10.1038/s41598-019-52791-5
    Journal articles | 2019
    Professor Ruiting Lan
    Wang X; Zhou H; Chen D; Du P; Lan R; Qiu X; Hou X; Liu Z; Sun L; Xu S; Ji X; Li H; Li D; Zhang J; Zeng H; Li Z, 2019, 'Whole-genome sequencing reveals a prolonged and persistent intrahospital transmission of Corynebacterium striatum, an emerging multidrug-resistant pathogen', Journal of Clinical Microbiology, vol. 57, http://dx.doi.org/10.1128/JCM.00683-19
    Journal articles | 2019
    Professor Ruiting Lan
    Wang M; Du P; Wang J; Lan R; Huang J; Luo M; Jiang Y; Zeng J; Quan Y; Shi Z; Zheng H, 2019, 'Genomic epidemiology of Streptococcus suis sequence type 7 sporadic infections in the Guangxi Zhuang Autonomous Region of China', Pathogens, vol. 8, http://dx.doi.org/10.3390/pathogens8040187
    Journal articles | 2019
    Professor Ruiting Lan
    Liu S; Feng J; Pu J; Xu X; Lu S; Yang J; Wang Y; Jin D; Du X; Meng X; Luo X; Sun H; Xiong Y; Ye C; Lan R; Xu J, 2019, 'Genomic and molecular characterisation of Escherichia marmotae from wild rodents in Qinghai-Tibet plateau as a potential pathogen', Scientific Reports, vol. 9, pp. 10619, http://dx.doi.org/10.1038/s41598-019-46831-3
    Journal articles | 2019
    Professor Ruiting Lan
    Gan L; Cao X; Wang Y; Wang Y; Jiang H; Lan R; Xu J; Ye C, 2019, 'Carriage and potential long distance transmission of Listeria monocytogenes by migratory black-headed gulls in Dianchi Lake, Kunming', Emerging Microbes and Infections, vol. 8, pp. 1195 - 1204, http://dx.doi.org/10.1080/22221751.2019.1647764
    Journal articles | 2019
    Professor Ruiting Lan
    Wang Y; Luo L; Li Q; Wang H; Wang Y; Sun H; Xu J; Lan R; Ye C, 2019, 'Genomic dissection of the most prevalent Listeria monocytogenes clone, sequence type ST87, in China', BMC Genomics, vol. 20, pp. 1014, http://dx.doi.org/10.1186/s12864-019-6399-1
    Journal articles | 2019
    Professor Ruiting Lan
    Xu X; Zhang H; Huang Y; Zhang Y; Wu C; Gao P; Teng Z; Luo X; Peng X; Wang X; Wang D; Pu J; Zhao H; Lu X; Lu S; Ye C; Dong Y; Lan R; Xu J, 2019, 'Beyond a Ribosomal RNA Methyltransferase, the Wider Role of MraW in DNA Methylation, Motility and Colonization in Escherichia coli O157:H7', Frontiers in Microbiology, vol. 10, http://dx.doi.org/10.3389/fmicb.2019.02520
    Journal articles | 2019
    Professor Ruiting Lan
    Luo L; Chen X; Payne M; Cao X; Wang Y; Zhang J; Deng J; Wang H; Zhang Z; Li Q; Lan R; Ye C, 2019, 'Case report: Whole genome sequencing based investigation of maternal-neonatal listeriosis in Sichuan, China', BMC Infectious Diseases, vol. 19, pp. 893, http://dx.doi.org/10.1186/s12879-019-4551-9
    Journal articles | 2019
    Professor Ruiting Lan
    Zhang X; Payne M; Lan R, 2019, 'In silico identification of serovar-specific genes for salmonella serotyping', Frontiers in Microbiology, vol. 10, pp. 835, http://dx.doi.org/10.3389/fmicb.2019.00835
    Journal articles | 2019
    Professor Ruiting Lan
    Safarchi A; Octavia S; Nikbin VS; Lotfi MN; Zahraei SM; Tay CY; Lamichhane B; Shahcheraghi F; Lan R, 2019, 'Genomic epidemiology of Iranian Bordetella pertussis: 50 years after the implementation of whole cell vaccine', Emerging Microbes and Infections, vol. 8, pp. 1416 - 1427, http://dx.doi.org/10.1080/22221751.2019.1665479
    Journal articles | 2019
    Professor Ruiting Lan
    Xu Z; Octavia S; Luu LDW; Payne M; Timms V; Tay CY; Keil AD; Sintchenko V; Guiso N; Lan R, 2019, 'Pertactin-negative and filamentous hemagglutinin-negative Bordetella pertussis, Australia, 2013-2017', Emerging Infectious Diseases, vol. 25, pp. 1196 - 1199, http://dx.doi.org/10.3201/eid2506.180240
    Journal articles | 2019
    Professor Ruiting Lan
    Xu Z; Wang Z; Luan Y; Li Y; Liu X; Peng X; Octavia S; Payne M; Lan R, 2019, 'Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China', Emerging Microbes and Infections, vol. 8, pp. 461 - 470, http://dx.doi.org/10.1080/22221751.2019.1587315
    Journal articles | 2019
    Professor Ruiting Lan
    Kamachi K; Otsuka N; Fumimoto R; Ozawa K; Yao SM; Chiang CS; Luu LDW; Lan R; Shibayama K; Watanabe M, 2019, 'A novel multilocus variable-number tandem repeat analysis for Bordetella parapertussis', Journal of medical microbiology, vol. 68, pp. 1671 - 1676, http://dx.doi.org/10.1099/jmm.0.001095
    Journal articles | 2018
    Professor Ruiting Lan
    Dhakal R; Wang Q; Lan R; Howard P; Sintchenko V, 2018, 'Novel multiplex PCR assay for identification and subtyping of enteroinvasive escherichia coli and differentiation from shigella based on target genes selected by comparative genomics', Journal of Medical Microbiology, vol. 67, pp. 1257 - 1264, http://dx.doi.org/10.1099/jmm.0.000784
    Journal articles | 2018
    Professor Ruiting Lan
    Liu L; Chen D; Liu L; Lan R; Hao S; Jin W; Sun H; Wang Y; Liang Y; Xu J, 2018, 'Genetic diversity, multidrug resistance, and virulence of citrobacter freundii from diarrheal patients and healthy individuals', Frontiers in Cellular and Infection Microbiology, vol. 8, http://dx.doi.org/10.3389/fcimb.2018.00233
    Journal articles | 2018
    Professor Ruiting Lan
    Sotomayor C; Wang Q; Arnott A; Howard P; Hope K; Lan R; Sintchenko V, 2018, 'Novel salmonella enterica serovar typhimurium genotype levels as herald of seasonal salmonellosis epidemics', Emerging Infectious Diseases, vol. 24, pp. 1079 - 1082, http://dx.doi.org/10.3201/eid2406.171096
    Journal articles | 2018
    Professor Ruiting Lan
    Li H; Wang P; Lan R; Luo L; Cao X; Wang Y; Wang Y; Li H; Zhang L; Ji S; Ye C, 2018, 'Risk factors and level of Listeria monocytogenes contamination of raw pork in retail markets in China', Frontiers in Microbiology, vol. 9, http://dx.doi.org/10.3389/fmicb.2018.01090
    Journal articles | 2018
    Professor Ruiting Lan
    Liu F; Ma R; Tay CYA; Octavia S; Lan R; Chung HKL; Riordan SM; Grimm MC; Leong RW; Tanaka MM; Connor S; Zhang L, 2018, 'Genomic analysis of oral Campylobacter concisus strains identified a potential bacterial molecular marker associated with active Crohn's disease', Emerging Microbes and Infections, vol. 7, http://dx.doi.org/10.1038/s41426-018-0065-6
    Journal articles | 2018
    Professor Ruiting Lan
    Wai Luu LD; Octavia S; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2018, 'Comparison of the whole cell proteome and secretome of epidemic bordetella pertussis strains from the 2008–2012 Australian epidemic under sulfate-modulating conditions', Frontiers in Microbiology, vol. 9, http://dx.doi.org/10.3389/fmicb.2018.02851
    Journal articles | 2018
    Professor Ruiting Lan
    Luu LDW; Octavia S; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2018, 'Proteomic Adaptation of Australian Epidemic Bordetella pertussis', Proteomics, vol. 18, http://dx.doi.org/10.1002/pmic.201700237
    Journal articles | 2017
    Professor Ruiting Lan
    Meng X; Lu S; Wang Y; Lai XH; Wen Y; Jin D; Yang J; Bai X; Zhang G; Pu J; Lan R; Xu J, 2017, 'Actinomyces vulturis sp. Nov., isolated from gyps himalayensis', International Journal of Systematic and Evolutionary Microbiology, vol. 67, pp. 1720 - 1726, http://dx.doi.org/10.1099/ijsem.0.001851
    Journal articles | 2017
    Professor Ruiting Lan
    Octavia S; Wu SZ; Kaur S; Valinsky L; Marva E; Moran-Gilad J; Lan R, 2017, 'Whole-genome sequencing and comparative genomic analysis of Bordetella pertussis isolates from the 2007–2008 epidemic in Israel', Journal of Infection, vol. 74, pp. 204 - 207, http://dx.doi.org/10.1016/j.jinf.2016.11.012
    Journal articles | 2017
    Professor Ruiting Lan
    Chen X; Zhao X; Che J; Xiong Y; Xu Y; Zhang L; Lan R; Xia L; Walsh TR; Xu J; Lu J; Li J, 2017, 'Detection and dissemination of the colistin resistance gene, mcr-1, from isolates and faecal samples in China', Journal of Medical Microbiology, vol. 66, pp. 119 - 125, http://dx.doi.org/10.1099/jmm.0.000425
    Journal articles | 2017
    Professor Ruiting Lan
    Du P; Zheng H; Zhou J; Lan R; Ye C; Jing H; Jin D; Cui Z; Bai X; Liang J; Liu J; Xu L; Zhang W; Chen C; Xu J, 2017, 'Detection of multiple parallel transmission outbreak of streptococcus suis human infection by use of genome epidemiology, China, 2005', Emerging Infectious Diseases, vol. 23, pp. 204 - 211, http://dx.doi.org/10.3201/eid2302.160297
    Journal articles | 2017
    Professor Ruiting Lan
    Niu L; Lu S; Lai XH; Hu S; Chen C; Zhang G; Yang J; Jin D; Wang Y; Lan R; Lu G; Xie Y; Ye C; Xu J, 2017, 'Streptococcus himalayensis sp. Nov., isolated from the respiratory tract of marmota himalayana', International Journal of Systematic and Evolutionary Microbiology, vol. 67, pp. 256 - 261, http://dx.doi.org/10.1099/ijsem.0.001609
    Journal articles | 2017
    Professor Ruiting Lan
    Bai L; Wang L; Yang X; Wang J; Gan X; Wang W; Xu J; Chen Q; Lan R; Fanning S; Li F, 2017, 'Prevalence and molecular characteristics of extended-spectrum ß-lactamase genes in Escherichia coli isolated from diarrheic patients in China', Frontiers in Microbiology, vol. 8, http://dx.doi.org/10.3389/fmicb.2017.00144
    Journal articles | 2017
    Professor Ruiting Lan
    Luo L; Zhang Z; Wang H; Wang P; Lan R; Deng J; Miao Y; Wang Y; Wang Y; Xu J; Zhang L; Sun S; Liu X; Zhou Y; Chen X; Li Q; Ye C, 2017, 'A 12-month longitudinal study of Listeria monocytogenes contamination and persistence in pork retail markets in China', Food Control, vol. 76, pp. 66 - 73, http://dx.doi.org/10.1016/j.foodcont.2016.12.037
    Journal articles | 2017
    Professor Ruiting Lan
    Liu L; Lan R; Liu L; Wang Y; Zhang Y; Wang Y; Xu J, 2017, 'Antimicrobial resistance and cytotoxicity of Citrobacter spp. in Maanshan Anhui Province, China', Frontiers in Microbiology, vol. 8, http://dx.doi.org/10.3389/fmicb.2017.01357
    Journal articles | 2017
    Professor Ruiting Lan
    Wang Y; Lu L; Lan R; Salazar JK; Liu J; Xu J; Ye C, 2017, 'Isolation and characterization of Listeria species from rodents in natural environments in China', Emerging Microbes and Infections, vol. 6, http://dx.doi.org/10.1038/emi.2017.28
    Journal articles | 2017
    Professor Ruiting Lan
    Fu S; Hiley L; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2017, 'Comparative genomics of Australian and international isolates of Salmonella Typhimurium: Correlation of core genome evolution with CRISPR and prophage profiles', Scientific Reports, vol. 7, http://dx.doi.org/10.1038/s41598-017-06079-1
    Journal articles | 2017
    Professor Ruiting Lan
    Jones M; Octavia S; Lammers G; Heller J; Lan R, 2017, 'Population and evolutionary dynamics of Shiga-toxin producing Escherichia coli O157 in a beef herd: A longitudinal study', Environmental Microbiology, vol. 19, pp. 1836 - 1844, http://dx.doi.org/10.1111/1462-2920.13679
    Journal articles | 2017
    Professor Ruiting Lan
    Luu LDW; Octavia S; Zhong L; Raftery M; Sintchenko V; Lan R, 2017, 'Characterisation of the Bordetella pertussis secretome under different media', Journal of Proteomics, vol. 158, pp. 43 - 51, http://dx.doi.org/10.1016/j.jprot.2017.02.010
    Journal articles | 2017
    Professor Ruiting Lan
    Ahlstrom C; Muellner P; Lammers G; Jones M; Octavia S; Lan R; Heller J, 2017, 'Shiga toxin-producing Escherichia coli O157 shedding dynamics in an Australian beef herd', Frontiers in Veterinary Science, vol. 4, http://dx.doi.org/10.3389/fvets.2017.00200
    Journal articles | 2017
    Professor Ruiting Lan
    Chung HKL; Tay A; Octavia S; Chen J; Liu F; Ma R; Lan R; Riordan SM; Grimm MC; Zhang L, 2017, 'Erratum: Genome analysis of Campylobacter concisus strains from patients with inflammatory bowel disease and gastroenteritis provides new insights into pathogenicity', Scientific reports, vol. 7, pp. 41113, http://dx.doi.org/10.1038/srep41113
    Journal articles | 2017
    Professor Ruiting Lan
    Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, 2017, 'Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection', Infection, Genetics and Evolution, vol. 51, pp. 17 - 20, http://dx.doi.org/10.1016/j.meegid.2017.03.004
    Journal articles | 2017
    Professor Ruiting Lan
    Carbonetti NH; Wirsing von König CH; Lan R; Jacob-Dubuisson F; Cotter PA; Deora R; Merkel TJ; van Els CA; Locht C; Hozbor D; Rodriguez ME, 2017, 'Erratum for Carbonetti et al., "Highlights of the 11th International Bordetella Symposium: from Basic Biology to Vaccine Development".', Clin Vaccine Immunol, vol. 24, http://dx.doi.org/10.1128/CVI.00071-17
    Journal articles | 2017
    Professor Ruiting Lan
    Meng X; Lu S; Wang Y; Lai X-H; Wen Y; Jin D; Yang J; Bai X; Zhang G; Pu J; Lan R; Xu J, 2017, 'Corrigendum: Actinomyces vulturis sp. nov., isolated from Gyps himalayensis.', Int J Syst Evol Microbiol, vol. 67, pp. 3134, http://dx.doi.org/10.1099/ijsem.0.002235
    Journal articles | 2016
    Professor Ruiting Lan
    Luo Y; Octavia S; Jin D; Ye J; Miao Z; Jiang T; Xia S; Lan R, 2016, 'US Gulf-like toxigenic O1 Vibrio cholerae causing sporadic cholera outbreaks in China', Journal of Infection, vol. 72, pp. 564 - 572, http://dx.doi.org/10.1016/j.jinf.2016.02.005
    Journal articles | 2016
    Professor Ruiting Lan
    Carbonetti NH; Von König CHW; Lan R; Jacob-Dubuisson F; Cotter PA; Deora R; Merkel TJ; Van Els CA; Locht C; Hozbor D; Rodriguez ME, 2016, 'Highlights of the 11th international Bordetella symposium: From basic biology to vaccine development', Clinical and Vaccine Immunology, vol. 23, pp. 842 - 850, http://dx.doi.org/10.1128/CVI.00388-16
    Journal articles | 2016
    Professor Ruiting Lan
    Qiu X; Bai X; Lan R; Zheng H; Xu J, 2016, 'Novel capsular polysaccharide loci and new diagnostic tools for high-throughput capsular gene typing in Streptococcus suis', Applied and Environmental Microbiology, vol. 82, pp. 7102 - 7112, http://dx.doi.org/10.1128/AEM.02102-16
    Journal articles | 2016
    Professor Ruiting Lan
    Niu L; Lu S; Hu S; Jin D; Lai X; Yangn J; Chen C; Wang Y; Wang Y; Bai X; Lan R; Lv G; Xie Y; Ye C; Xu J, 2016, 'Streptococcus marmotae sp. Nov., isolated from the respiratory tract of marmota himalayana', International Journal of Systematic and Evolutionary Microbiology, vol. 66, pp. 4315 - 4322, http://dx.doi.org/10.1099/ijsem.0.001350
    Journal articles | 2016
    Professor Ruiting Lan
    Qin T; Zhang W; Liu W; Zhou H; Ren H; Shao Z; Lan R; Xu J, 2016, 'Population structure and minimum core genome typing of Legionella pneumophila', Scientific Reports, vol. 6, http://dx.doi.org/10.1038/srep21356
    Journal articles | 2016
    Professor Ruiting Lan
    Lu S; Jin D; Wu S; Yang J; Lan R; Bai X; Liu S; Meng Q; Yuan X; Zhou J; Pu J; Chen Q; Dai H; Hu Y; Xiong Y; Ye C; Xu J, 2016, 'Insights into the evolution of pathogenicity of Escherichia coli from genomic analysis of intestinal E. coli of Marmota himalayana in Qinghai-Tibet plateau of China', Emerging Microbes and Infections, vol. 5, http://dx.doi.org/10.1038/emi.2016.122
    Journal articles | 2016
    Professor Ruiting Lan
    Niu L; Lu S; Hu S; Jin D; Lai X; Yang J; Chen C; Wang Y; Bai X; Lan R; Lv G; Xie Y; Ye C; Xu J, 2016, 'Streptococcus halotolerans sp. nov. isolated from the respiratory tract of Marmota himalayana in Qinghai-Tibet plateau of China', International Journal of Systematic and Evolutionary Microbiology, vol. 66, pp. 4211 - 4217, http://dx.doi.org/10.1099/ijsem.0.001337
    Journal articles | 2016
    Professor Ruiting Lan
    Chen D; Gong L; Walsh TR; Lan R; Wang T; Zhang J; Mai W; Ni N; Lu J; Xu J; Li J, 2016, 'Infection by and dissemination of NDM-5-producing Escherichia coli in China', Journal of Antimicrobial Chemotherapy, vol. 71, pp. 563 - 565, http://dx.doi.org/10.1093/jac/dkv352
    Journal articles | 2016
    Professor Ruiting Lan
    Liu F; Lee H; Lan R; Zhang L, 2016, 'Zonula occludens toxins and their prophages in Campylobacter species', Gut Pathogens, vol. 8, http://dx.doi.org/10.1186/s13099-016-0125-1
    Journal articles | 2016
    Professor Ruiting Lan
    Chung HKL; Tay A; Octavia S; Chen J; Liu F; Ma R; Lan R; Riordan SM; Grimm MC; Zhang L, 2016, 'Genome analysis of Campylobacter concisus strains from patients with inflammatory bowel disease and gastroenteritis provides new insights into pathogenicity', Scientific Reports, vol. 6, http://dx.doi.org/10.1038/srep38442
    Journal articles | 2016
    Professor Ruiting Lan
    Chan CHS; Octavia S; Sintchenko V; Lan R, 2016, 'SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes', Computational Biology and Chemistry, vol. 65, pp. 178 - 184, http://dx.doi.org/10.1016/j.compbiolchem.2016.09.004
    Journal articles | 2016
    Professor Ruiting Lan
    Phillips A; Sotomayor C; Wang Q; Holmes N; Furlong C; Ward K; Howard P; Octavia S; Lan R; Sintchenko V, 2016, 'Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014', BMC Microbiology, vol. 16, http://dx.doi.org/10.1186/s12866-016-0831-3
    Journal articles | 2016
    Professor Ruiting Lan
    Safarchi A; Octavia S; Wu SZ; Kaur S; Sintchenko V; Gilbert GL; Wood N; McIntyre P; Marshall H; Keil AD; Lan R, 2016, 'Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic', Journal of Infection, vol. 72, pp. 468 - 477, http://dx.doi.org/10.1016/j.jinf.2016.01.005
    Journal articles | 2016
    Professor Ruiting Lan
    Fu S; Octavia S; Wang Q; Tanaka MM; Tay CY; Sintchenko V; Lan R, 2016, 'Evolution of variable number tandem repeats and its relationship with genomic diversity in Salmonella typhimurium', Frontiers in Microbiology, vol. 7, http://dx.doi.org/10.3389/fmicb.2016.02002
    Journal articles | 2016
    Professor Ruiting Lan
    Clarke M; McIntyre PB; Blyth CC; Wood N; Octavia S; Sintchenko V; Giles L; Quinn H; Hill V; Hanly G; Lan R; Marshall HS, 2016, 'The relationship between Bordetella pertussis genotype and clinical severity in Australian children with pertussis', Journal of Infection, vol. 72, pp. 171 - 178, http://dx.doi.org/10.1016/j.jinf.2015.11.004
    Journal articles | 2016
    Professor Ruiting Lan
    Safarchi A; Octavia S; Luu LDW; Tay CY; Sintchenko V; Wood N; Marshall H; McIntyre P; Lan R, 2016, 'Better colonisation of newly emerged Bordetella pertussis in the co-infection mouse model study', Vaccine, vol. 34, pp. 3967 - 3971, http://dx.doi.org/10.1016/j.vaccine.2016.06.052
    Journal articles | 2016
    Professor Ruiting Lan
    Li H; Lan R; Peng N; Sun J; Zhu Y, 2016, 'High resolution melting curve analysis with MATLAB-based program', Measurement: Journal of the International Measurement Confederation, vol. 90, pp. 178 - 186, http://dx.doi.org/10.1016/j.measurement.2016.04.057
    Journal articles | 2015
    Professor Ruiting Lan
    Zheng H; Ji S; Liu Z; Lan R; Huang Y; Bai X; Gottschalk M; Xu J, 2015, 'Eight novel capsular polysaccharide synthesis gene loci identified in nontypeable Streptococcus suis isolates', Applied and Environmental Microbiology, vol. 81, pp. 4111 - 4119, http://dx.doi.org/10.1128/AEM.00315-15
    Journal articles | 2015
    Professor Ruiting Lan
    Liu S; Jin D; Lan R; Wang Y; Meng Q; Dai H; Lu S; Hu S; Xu J, 2015, 'Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana', International Journal of Systematic and Evolutionary Microbiology, vol. 65, pp. 2130 - 2134, http://dx.doi.org/10.1099/ijs.0.000228
    Journal articles | 2015
    Professor Ruiting Lan
    Wang Y; Jiao Y; Lan R; Xu X; Liu G; Wang X; Zhang L; Pang H; Jin D; Dai H; Yuan X; Zhang W; Xu J; Ye C, 2015, 'Characterization of Listeria monocytogenes isolated from human Listeriosis cases in China', Emerging Microbes and Infections, vol. 4, pp. 1 - 3, http://dx.doi.org/10.1038/emi.2015.50
    Journal articles | 2015
    Professor Ruiting Lan
    Bai L; Lan R; Zhang X; Cui S; Xu J; Guo Y; Li F; Zhang D, 2015, 'Prevalence of salmonella isolates from chicken and pig slaughterhouses and emergence of ciprofloxacin and cefotaxime co-resistant S. enterica serovar Indiana in Henan, China', PLoS ONE, vol. 10, http://dx.doi.org/10.1371/journal.pone.0144532
    Journal articles | 2015
    Professor Ruiting Lan
    Bai L; Guo Y; Lan R; Dong Y; Wang W; Hu Y; Gan X; Yan S; Fu P; Pei X; Xu J; Liu X; Li F, 2015, 'Genotypic characterization of Shiga toxin-producing Escherichia coli O157:H7 isolates in food products from china between 2005 and 2010', Food Control, vol. 50, pp. 209 - 214, http://dx.doi.org/10.1016/j.foodcont.2014.08.045
    Journal articles | 2015
    Professor Ruiting Lan
    Liu L; Hao S; Lan R; Wang G; Xiao D; Sun H; Xu J, 2015, 'The type VI secretion system modulates flagellar gene expression and secretion in Citrobacter freundii and contributes to adhesion and cytotoxicity to host cells', Infection and Immunity, vol. 83, pp. 2596 - 2604, http://dx.doi.org/10.1128/IAI.03071-14
    Journal articles | 2015
    Professor Ruiting Lan
    Wang Y; Wang Y; Lan R; Xu H; Ma A; Li D; Dai H; Yuan X; Xu J; Ye C, 2015, 'Multiple endonuclease restriction real-time loop-mediated isothermal amplification: A novel analytically rapid, sensitive, multiplex loop-mediated isothermal amplification detection technique', Journal of Molecular Diagnostics, vol. 17, pp. 392 - 401, http://dx.doi.org/10.1016/j.jmoldx.2015.03.002
    Journal articles | 2015
    Professor Ruiting Lan
    Octavia S; Wang Q; Tanaka MM; Kaur S; Sintchenko V; Lan R, 2015, 'Delineating community outbreaks of Salmonella enterica serovar typhimurium by use of whole-genome sequencing: Insights into genomic variability within an outbreak', Journal of Clinical Microbiology, vol. 53, pp. 1063 - 1071, http://dx.doi.org/10.1128/JCM.03235-14
    Journal articles | 2015
    Professor Ruiting Lan
    Fu S; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2015, 'Defining the core genome of salmonella enterica serovar typhimurium for genomic surveillance and epidemiological typing', Journal of Clinical Microbiology, vol. 53, pp. 2530 - 2538, http://dx.doi.org/10.1128/JCM.03407-14
    Journal articles | 2015
    Professor Ruiting Lan
    Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, 2015, 'Genomic variability of serial human isolates of salmonella enterica serovar typhimurium associated with prolonged carriage', Journal of Clinical Microbiology, vol. 53, pp. 3507 - 3514, http://dx.doi.org/10.1128/JCM.01733-15
    Journal articles | 2015
    Professor Ruiting Lan
    Fung CC; Octavia S; Mooney AM; Lan R, 2015, 'Virulence variations in Shigella and enteroinvasive Escherichia coli using the Caenorhabditis elegans model', FEMS Microbiology Letters, vol. 362, http://dx.doi.org/10.1093/femsle/fnu045
    Journal articles | 2015
    Professor Ruiting Lan
    Octavia S; Sara J; Lan R, 2015, 'Characterization of a large novel phage-like plasmid in Salmonella enterica serovar Typhimurium', FEMS Microbiology Letters, vol. 362, http://dx.doi.org/10.1093/femsle/fnv044
    Journal articles | 2015
    Professor Ruiting Lan
    Mahendran V; Octavia S; Demirbas OF; Sabrina S; Ma R; Lan R; Riordan SM; Grimm MC; Zhang L, 2015, 'Delineation of genetic relatedness and population structure of oral and enteric Campylobacter concisus strains by analysis of housekeeping genes', Microbiology (United Kingdom), vol. 161, pp. 1600 - 1612, http://dx.doi.org/10.1099/mic.0.000112
    Journal articles | 2015
    Professor Ruiting Lan
    Safarchi A; Octavia S; Luu LDW; Tay CY; Sintchenko V; Wood N; Marshall H; McIntyre P; Lan R, 2015, 'Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model', Vaccine, vol. 33, pp. 6277 - 6281, http://dx.doi.org/10.1016/j.vaccine.2015.09.064
    Journal articles | 2015
    Professor Ruiting Lan
    Fu S; Liu Y; Li X; Tu J; Lan R; Tian H, 2015, 'A preliminary stochastic model for managing microorganisms in a recirculating aquaculture system', Annals of Microbiology, vol. 65, pp. 1119 - 1129, http://dx.doi.org/10.1007/s13213-014-0958-0
    Journal articles | 2014
    Professor Ruiting Lan
    Lee H; Ma R; Grimm MC; Riordan SM; Lan R; Zhong L; Raftery M; Zhang L, 2014, 'Examination of the anaerobic growth of Campylobacter concisus strains', International Journal of Microbiology, vol. 2014, http://dx.doi.org/10.1155/2014/476047
    Journal articles | 2014
    Professor Ruiting Lan
    Zhang N; Lan R; Sun Q; Wang J; Wang Y; Zhang J; Yu D; Hu W; Hu S; Dai H; Du P; Wang H; Xu J, 2014, 'Genomic portrait of the evolution and epidemic spread of a recently emerged multidrug-resistant shigella flexneri clone in China', Journal of Clinical Microbiology, vol. 52, pp. 1119 - 1126, http://dx.doi.org/10.1128/JCM.02669-13
    Journal articles | 2014
    Professor Ruiting Lan
    Meng Q; Bai X; Zhao A; Lan R; Du H; Wang T; Shi C; Yuan X; Bai X; Ji S; Jin D; Yu B; Wang Y; Sun H; Liu K; Xu J; Xiong Y, 2014, 'Characterization of Shiga toxin-producing Escherichia coli isolated from healthy pigs in China', BMC Microbiology, vol. 14, http://dx.doi.org/10.1186/1471-2180-14-5
    Journal articles | 2014
    Professor Ruiting Lan
    Sun Q; Knirel YA; Wang J; Luo X; Senchenkova SN; Lan R; Shashkov AS; Xu J, 2014, 'Serotype-converting bacteriophage SfII encodes an acyltransferase protein that mediates 6-O-acetylation of GlcNAc in Shigella flexneri O-antigens, conferring on the host a novel O-antigen epitope', Journal of Bacteriology, vol. 196, pp. 3656 - 3666, http://dx.doi.org/10.1128/JB.02009-14
    Journal articles | 2014
    Professor Ruiting Lan
    Zheng H; Ji S; Lan R; Liu Z; Bai X; Zhang W; Gottschalk M; Xu J, 2014, 'Population analysis of Streptococcus suis Isolates from slaughtered swine by use of minimum core genome sequence typing', Journal of Clinical Microbiology, vol. 52, pp. 3568 - 3572, http://dx.doi.org/10.1128/JCM.00536-14
    Journal articles | 2014
    Professor Ruiting Lan
    Sun Q; Knirel YA; Lan R; Wang J; Senchenkova SN; Shashkov AS; Wang Y; Wang Y; Luo X; Xu J, 2014, 'Dissemination and serotype modification potential of pSFxv-2, an O-antigen PEtN modification plasmid in Shigella flexneri', Glycobiology, vol. 24, pp. 305 - 313, http://dx.doi.org/10.1093/glycob/cwt115
    Journal articles | 2014
    Professor Ruiting Lan
    Wang J; Lan R; Knirel YA; Luo X; Senchenkova SN; Shashkov AS; Xu J; Sun Q, 2014, 'Serological identification and prevalence of a novel o-antigen epitope linked to 3-and 4-o-acetylated rhamnose III of lipopolysaccharide in shigella flexneri', Journal of Clinical Microbiology, vol. 52, pp. 2033 - 2038, http://dx.doi.org/10.1128/JCM.00197-14
    Journal articles | 2014
    Professor Ruiting Lan
    Wang J; Knirel YA; Lan R; Senchenkova SN; Luo X; Perepelov AV; Wang Y; Shashkov AS; Xu J; Sun Q, 2014, 'Identification of an O-acyltransferase gene (oacB) that mediates 3-and 4-O-acetylation of Rhamnose III in Shigella flexneri O antigens', Journal of Bacteriology, vol. 196, pp. 1525 - 1531, http://dx.doi.org/10.1128/JB.01393-13
    Journal articles | 2014
    Professor Ruiting Lan
    Li J; Lan R; Xiong Y; Ye C; Yuan M; Liu X; Chen X; Yu D; Liu B; Lin W; Bai X; Wang Y; Sun Q; Wang Y; Zhao H; Meng Q; Chen Q; Zhao A; Xu J, 2014, 'Sequential isolation in a patient of Raoultella planticola and Escherichia coli bearing a novel IS CR1 element carrying blaNDM-1', PLoS ONE, vol. 9, http://dx.doi.org/10.1371/journal.pone.0089893
    Journal articles | 2014
    Professor Ruiting Lan
    Bart MJ; Harris SR; Advani A; Arakawa Y; Bottero D; Bouchez V; Cassiday PK; Chiang CS; Dalby T; Fry NK; Gaillard ME; van Gent M; Guiso N; Hallander HO; Harvill ET; He Q; van der Heide HGJ; Heuvelman K; Hozbor DF; Kamachi K; Karataev GI; Lan R; Lutyńska A; Maharjan RP; Mertsola J; Miyamura T; Octavia S; Preston A; Quail MA; Sintchenko V; Stefanelli P; Tondella ML; Tsang RSW; Xu Y; Yao SM; Zhang S; Parkhill J; Mooi FR, 2014, 'Global population structure and evolution of Bordetella pertussis and their relationship with vaccination', mBio, vol. 5, http://dx.doi.org/10.1128/mBio.01074-14
    Journal articles | 2014
    Professor Ruiting Lan
    Dadigamuwage A, 2014, 'Population structure and virulence content of avian pathogenic Escherichia coli isolated from outbreaks in Sri Lanka', Veterinary Microbiology, vol. 168, pp. 403 - 412, http://dx.doi.org/10.1016/j.vetmic.2013.11.028
    Journal articles | 2014
    Professor Ruiting Lan
    Lam C; Octavia S; Ricafort L; Sintchenko V; Gilbert GL; Wood N; McIntyre P; Marshall H; Guiso N; Keil AD; Lawrence A; Robson J; Hogg G; Lan R, 2014, 'Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia', Emerging Infectious Diseases, vol. 20, pp. 626 - 633, http://dx.doi.org/10.3201/eid2004.131478
    Journal articles | 2014
    Professor Ruiting Lan
    Chen C; Zhang W; Zheng H; Lan R; Wang H; Du P; Bai X; Ji S; Meng Q; Jin D; Liu K; Jing H; Ye C; Gao GF; Wang L; Gottschalk EM; Xu J, 2014, 'Erratum: Correction for Chen et al., minimum core genome sequence typing of bacterial pathogens: A unified approach for clinical and public health microbiology (J. Clin. Microbiol. (2014) 52:11 (4120) 10.1128/JCM.02282-14)', Journal of Clinical Microbiology, vol. 52, pp. 4120, http://dx.doi.org/10.1128/JCM.02282-14
    Journal articles | 2014
    Professor Ruiting Lan
    Zheng H; Lan R; Zheng X; Cui Z; Liu Z; Bai X; Ji S; Gottschalk M; Xu J, 2014, 'Comparative genomic hybridization identifies virulence differences in Streptococcus suis', PLoS ONE, vol. 9, http://dx.doi.org/10.1371/journal.pone.0087866
    Journal articles | 2014
    Professor Ruiting Lan
    Knirel YA; Wang J; Luo X; Senchenkova SN; Lan R; Shpirt AM; Du P; Shashkov AS; Zhang N; Xu J; Sun Q, 2014, 'Genetic and structural identification of an O-acyltransferase gene (oacC) responsible for the 3/4-O-acetylation on rhamnose III in Shigella flexneri serotype 6', BMC Microbiology, vol. 14, http://dx.doi.org/10.1186/s12866-014-0266-7
    Journal articles | 2014
    Professor Ruiting Lan
    Lam C; Octavia S; Sintchenko V; Gilbert GL; Lan R, 2014, 'Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB)', BMC Research Notes, vol. 7, http://dx.doi.org/10.1186/1756-0500-7-727
    Journal articles | 2013
    Professor Ruiting Lan
    Luo Y; Ye J; Jin D; Ding G; Zhang Z; Mei L; Octavia S; Lan R, 2013, 'Molecular analysis of non-O1/non-O139 Vibrio cholerae isolated from hospitalised patients in China', BMC Microbiology, vol. 13, http://dx.doi.org/10.1186/1471-2180-13-52
    Journal articles | 2013
    Professor Ruiting Lan
    Liu Z; Zheng H; Gottschalk M; Bai X; Lan R; Ji S; Liu H; Xu J, 2013, 'Development of Multiplex PCR Assays for the Identification of the 33 Serotypes of Streptococcus suis', PLoS ONE, vol. 8, pp. e72070 - e72070, http://dx.doi.org/10.1371/journal.pone.0072070
    Journal articles | 2013
    Professor Ruiting Lan
    Bai X; Zhao A; Lan R; Xin Y; Xie H; Meng Q; Jin D; Yu B; Sun H; Lu S; Xu J; Xiong Y, 2013, 'Shiga Toxin-Producing Escherichia coli in Yaks (Bos grunniens) from the Qinghai-Tibetan Plateau, China', PLoS ONE, vol. 8, http://dx.doi.org/10.1371/journal.pone.0065537
    Journal articles | 2013
    Professor Ruiting Lan
    Sun Q; Lan R; Wang Y; Wang J; Wang Y; Li P; Du P; Xu J, 2013, 'Isolation and genomic characterization of SfI, a serotype-converting bacteriophage of Shigella flexneri', BMC Microbiology, vol. 13, http://dx.doi.org/10.1186/1471-2180-13-39
    Journal articles | 2013
    Professor Ruiting Lan
    Chen C; Zhang W; Zheng H; Lan R; Wang H; Du P; Bai X; Ji S; Meng Q; Jin D; Liu K; Jing H; Ye C; Gao GF; Wang L; Gottschalk M; Xu J, 2013, 'Minimum core genome sequence typing of bacterial pathogens: A unified approach for clinical and public health microbiology', Journal of Clinical Microbiology, vol. 51, pp. 2582 - 2591, http://dx.doi.org/10.1128/JCM.00535-13
    Journal articles | 2013
    Professor Ruiting Lan
    Xu YM; Xu XF; Lan R; Xiong Y; Ye C; Ren ZH; Liu L; Zhao A; Wu LF; Xu J, 2013, 'An O Island 172 Encoded RNA Helicase Regulates the Motility of Escherichia coli O157:H7', PLoS ONE, vol. 8, pp. Article number e64211, http://dx.doi.org/10.1371/journal.pone.0064211
    Journal articles | 2013
    Professor Ruiting Lan
    Sun Q; Lan R; Wang J; Xia S; Wang Y; Wang Y; Jin D; Yu B; Knirel YA; Xu J, 2013, 'Identification and Characterization of a Novel Shigella flexneri Serotype Yv in China', PLoS ONE, vol. 8, http://dx.doi.org/10.1371/journal.pone.0070238
    Journal articles | 2013
    Professor Ruiting Lan
    Zhao H; Chen C; Xiong Y; Lan R; Wang H; Yao X; Zhang X; Sun H; Zhao A; Bai X; Cheng Q; Ye C; Xu J, 2013, 'Global Transcriptional and Phenotypic Analyses of Escherichia coli O157:H7 Strain Xuzhou21 and Its pO157_Sal Cured Mutant', PLoS ONE, vol. 8, pp. Article numbere65466, http://dx.doi.org/10.1371/journal.pone.0065466
    Journal articles | 2013
    Professor Ruiting Lan
    Knirel YA; Lan R; Senchenkova SN; Wang J; Shashkov AS; Wang YM; Perepelov AV; Xiong Y; Xu J; Sun QZ, 2013, 'O-antigen structure of Shigella flexneri serotype Yv and effect of the lpt-O gene variation on phosphoethanolamine modification of S. flexneri O-antigens', Glycobiology, vol. 23, pp. 475 - 485, http://dx.doi.org/10.1093/glycob/cws222
    Journal articles | 2013
    Professor Ruiting Lan
    Octavia S; Salim A; Kurniawan J; Lam C; Leung Q; Ahsan S; Reeves PR; Nair GB; Lan R, 2013, 'Population Structure and Evolution of Non-O1/Non-O139 Vibrio cholerae by Multilocus Sequence Typing', PLoS ONE, vol. 8, http://dx.doi.org/10.1371/journal.pone.0065342
    Journal articles | 2013
    Professor Ruiting Lan
    Pang S; Octavia S; Feng L; Liu B; Reeves PR; Lan R; Wang L, 2013, 'Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types', BMC Genomics, vol. 14, http://dx.doi.org/10.1186/1471-2164-14-718
    Journal articles | 2013
    Professor Ruiting Lan
    Mahendran V; Tan YS; Riordan SM; Grimm MC; Day AS; Lemberg DA; Octavia S; Lan R; Zhang L, 2013, 'The Prevalence and Polymorphisms of Zonula Occluden Toxin Gene in Multiple Campylobacter concisus Strains Isolated from Saliva of Patients with Inflammatory Bowel Disease and Controls', PLoS ONE, vol. 8, http://dx.doi.org/10.1371/journal.pone.0075525
    Journal articles | 2013
    Professor Ruiting Lan
    Meng Q; Xiong Y; Lan R; Ye C; Wang T; Qi T; Wang Y; Wang H; Bai X; Bai X; Ji S; Jin D; Yuan X; Zhao A; Sun H; Jing H; Xu J, 2013, 'SNP genotyping of enterohemorrhagic Escherichia coli O157: H7 isolates from China and genomic identity of the 1999 Xuzhou outbreak', Infection, Genetics and Evolution, vol. 16, pp. 275 - 281, http://dx.doi.org/10.1016/j.meegid.2013.02.018
    Journal articles | 2013
    Professor Ruiting Lan
    Sun Q; Lan R; Wang Y; Wang J; Xia S; Wang Y; Zhang J; Yu D; Li Z; Jing H; Xu J, 2013, 'Identification of a divergent O-acetyltransferase gene oac1b from Shigella flexneri serotype 1b strains.', Emerging Microbes & Infections, vol. 1, pp. 1 - 7, http://dx.doi.org/10.1038/emi.2012.22
    Journal articles | 2013
    Professor Ruiting Lan
    Shashkov AS; Senchenkova SN; Sun QZ; Lan R; Wang J; Perepelov AV; Knirel YA; Xu J, 2013, 'Structure of the O-antigen of a novel Shigella flexneri serotype, 1d (I: 7,8)', Carbohydrate Research, vol. 373, pp. 93 - 96, http://dx.doi.org/10.1016/j.carres.2013.03.015
    Journal articles | 2012
    Professor Ruiting Lan
    Sun Q; Knirel YA; Lan R; Wang J; Senchenkova SN; Jin D; Shashkov AS; Xia S; Perepelov AV; Chen Q; Wang Y; Wang H; Xu J, 2012, 'A novel plasmid-encoded serotype conversion mechanism through addition of phosphoethanolamine to the O-antigen of shigella flexneri.', PLoS ONE, vol. 7, pp. e46095, http://dx.doi.org/10.1371/journal.pone.0046095
    Journal articles | 2012
    Professor Ruiting Lan
    Wang Y; Zhao A; Zhu R; Lan R; Jin D; Cui Z; Wang Y; Li Z; Wang Y; Xu J; Ye C, 2012, 'Genetic diversity and molecular typing of Listeria monocytogenes in China.', BMC Microbiology, vol. 12, pp. 1 - 9, http://dx.doi.org/10.1186/1471-2180-12-119
    Journal articles | 2012
    Professor Ruiting Lan
    Xiong Y; Wang P; Lan R; Ye C; Wang H; Ren J; Jing H; Wang Y; Zhou Z; Bai X; Cui Z; Luo X; Zhao A; Wang Y; Zhang S; Sun H; Wang L; Xu J, 2012, 'A novel escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China', PLoS ONE, vol. 7, pp. e36144, http://dx.doi.org/10.1371/journal.pone.0036144
    Journal articles | 2012
    Professor Ruiting Lan
    Bai L; Xia S; Lan R; Liu L; Ye C; Wang Y; Jin D; Cui Z; Jing H; Xiong Y; Bai X; Sun H; Zhang J; Wang L; Xu J, 2012, 'Isolation and characterization of cytotoxic,aggregative Citrobacter freundii.', PLoS One, vol. 7, pp. e33054, http://dx.doi.org/10.1371/journal.pone.0033054
    Journal articles | 2012
    Professor Ruiting Lan
    Octavia S; Sintchenko V; Gilbert GL; Lawrence AL; Keil AD; Hogg G; Lan R, 2012, 'Newly emerging clones of bordetella pertussis carrying prn2 and ptxP3 alleles implicated in Australian pertussis epidemic in 2008-2010', Journal of Infectious Diseases, vol. 205, pp. 1220 - 1224, http://dx.doi.org/10.1093/infdis/jis178
    Journal articles | 2012
    Professor Ruiting Lan
    Lam C; Octavia S; Reeves PR; Lan R, 2012, 'Multi-locus variable number tandem repeat analysis of 7th pandemic vibrio cholerae.', BMC Microbiology, vol. 12, pp. 1 - 11, http://dx.doi.org/10.1186/1471-2180-12-82
    Journal articles | 2012
    Professor Ruiting Lan
    Ismail Y; Mahendran V; Octavia S; Day AS; Riordan S; Grimm M; Lan R; Lemberg DA; Tran TAT; Zhang L, 2012, 'Investigation of the enteric pathogenic potential of oral campylobacter concisus strains isolated from patients with inflammatory bowel disease', PLoS One, vol. 7(5), pp. 1 - 11, http://dx.doi.org/10.1371/journal.pone.0038217
    Journal articles | 2012
    Professor Ruiting Lan
    Lam C; Octavia S; Bahrame Z; Sintchenko V; Gilbert GL; Lan R, 2012, 'Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis', Infection Genetics and Evolution, vol. 12, pp. 492 - 495, http://dx.doi.org/10.1016/j.meegid.2012.01.001
    Journal articles | 2012
    Professor Ruiting Lan
    Pang S; Octavia S; Reeves PR; Wang Q; Gilbert GL; Sintchenko V; Lan R, 2012, 'Genetic relationships of phage types and single nucleotide polymorphism typing of Salmonella enterica serovar Typhimurium', Journal of Clinical Microbiology, vol. 50, pp. 727 - 734, http://dx.doi.org/10.1128/JCM.01284-11
    Journal articles | 2012
    Professor Ruiting Lan
    Luo X; Sun Q; Lan R; Wang J; Li Z; Xia S; Zhang J; Wang Y; Jin D; Wang Y; Wang Y; Yu B; Cui Z; Xu J, 2012, 'Emergence of a novel Shigella flexneri serotype 1d in China.', Diagnostic Microbiology and Infectious Disease, vol. 74, pp. 316 - 319, http://dx.doi.org/10.1016/j.diagmicrobio.2012.06.022
    Journal articles | 2012
    Professor Ruiting Lan
    Grubman A; Seeman T; Polekhina G; Walker SK; Tye H; Wilson T; Lan R; Mitchell HM; Sutton P; Ferrero RL, 2012, '618 Gene Polymorphisms in Host-Adapted Helicobacter pylori: Loss of Type Four Secretion Functions Independent of the cag Pathogenicity Island', Gastroenterology, vol. 142, pp. S - 121, http://dx.doi.org/10.1016/s0016-5085(12)60458-2
    Journal articles | 2011
    Professor Ruiting Lan
    Lin FP; Lan R; Sintchenko V; Kong F; Gilbert GL; Coiera E, 2011, 'Computational genome-wide analysis of phylogenetic profiles reveal potential virulence genes of Streptococcus agalactiae', PLoS One, vol. 6, pp. e17964, http://dx.doi.org/10.1371/journal.pone.0017964
    Journal articles | 2011
    Professor Ruiting Lan
    Sun Q; Lan R; Wang Y; Zhao A; Zhang S; Wang J; Wang Y; Xia S; Jin D; Cui Z; Zhao H; Li Z; Ye C; Zhang S; Jing H; Xu J, 2011, 'Development of a multiplex PCR assay targeting O-antigen modification genes for molecular serotyping of Shigella flexneri', Journal of Clinical Microbiology, vol. 49, pp. 3766 - 3770, http://dx.doi.org/10.1128/JCM.01259-11
    Journal articles | 2011
    Professor Ruiting Lan
    Reeves PR; Liu B; Zhou Z; Li D; Guo D; Ren Y; Clabots C; Lan R; Johnson J; Wang L, 2011, 'Rates of mutation and host transmission for an escherichia coli clone over 3 years', PLoS One, vol. 6, pp. Article number e26907, http://dx.doi.org/10.1371/journal.pone.0026907
    Journal articles | 2011
    Professor Ruiting Lan
    Zheng X; Zheng H; Lan R; Ye C; Wang Y; Zhang J; Jing H; Chen C; Segura M; Gottschalk M; Xu J, 2011, 'Identification of genes and genomic islands correlated with high pathogenicity in Streptococcus suis using whole genome tiling microarrays', PLoS One, vol. 6, pp. e17987, http://dx.doi.org/10.1371/journal.pone.0017987
    Journal articles | 2011
    Professor Ruiting Lan
    Octavia S; Ch''ng SL; Xia Q; Duong A; Tanaka M; Fukushima H; Lan R, 2011, 'Population structure and evolution of pathogenicity of Yersinia pseudotuberculosis', Applied and Environmental Microbiology, vol. 77, pp. 768 - 775, http://dx.doi.org/10.1128/AEM.01993-10
    Journal articles | 2011
    Professor Ruiting Lan
    Octavia S; Maharjan RP; Sintchenko V; Stevenson GM; Reeves PR; Gilbert GL; Lan R, 2011, 'Insight into evolution of Bordetella pertussis from comparative genomic analysis: Evidence of vaccine-driven selection', Molecular Biology and Evolution, vol. 28, pp. 707 - 715, http://dx.doi.org/10.1093/molbev/msq245
    Journal articles | 2011
    Professor Ruiting Lan
    Wang P; Xiong Y; Lan R; Ye C; Wang H; Ren J; Jing H; Wang Y; Zhou Z; Cui Z; Zhao H; Chen Y; Jin D; Bai X; Zhao A; Wang Y; Zhang S; Sun H; Li J; Wang T; Wang L; Xu J, 2011, 'PO157-Sal, a novel conjugative plasmid detected in outbreak isolates of Escherichia coli O157:H7', Journal of Clinical Microbiology, vol. 49, pp. 1594 - 1597, http://dx.doi.org/10.1128/JCM.02530-10
    Journal articles | 2011
    Professor Ruiting Lan
    Sun Q; Lan R; Wang Y; Wang J; Luo X; Zhang S; Li P; Wang Y; Ye C; Jing H; Xu J, 2011, 'Genesis of a novel Shigella flexneri serotype by sequential infection of serotype-converting bacteriophages SfX and SfI', BMC Microbiology, vol. 11, pp. 269, http://dx.doi.org/10.1186/1471-2180-11-269
    Journal articles | 2011
    Professor Ruiting Lan
    Cashmore AW; Lan R; Macartney K, 2011, 'Bug breakfast in the Bulletin. Pertussis in NSW and its prevention in infants and children.', NSW Public Health Bulletin, vol. 22, pp. 236 - 236
    Journal articles | 2011
    Professor Ruiting Lan
    Cashmore AW; Lan R; Macartney KK, 2011, 'Bug breakfast in the Bulletin. Pertussis in NSW and its prevention in infants and children.', New South Wales public health bulletin, vol. 22, pp. 236, http://dx.doi.org/10.1071/nb11032
    Journal articles | 2010
    Professor Ruiting Lan
    Zhou Z; Li X; Liu B; Beutin L; Xu J; Ren Y; Feng L; Lan R; Reeves PR; Wang L, 2010, 'Derivation of Escherichia coli O157:H7 from its O55:H7 precursor', PLoS One, vol. 5, pp. e8700, http://dx.doi.org/10.1371/journal.pone.0008700
    Journal articles | 2010
    Professor Ruiting Lan
    Ye C; Lan R; Xia S; Zhang J; Sun Q; Zhang S; Jing H; Jing H; Wang L; Li Z; Zhou Z; Zhao A; Cui Z; Cui J; Jin D; Huang L; Wang Y; Luo X; Bai X; Wang Y; Wang P; Xu Q; Xu J, 2010, 'Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri', Journal of Clinical Microbiology, vol. 48, pp. 419 - 426, http://dx.doi.org/10.1128/JCM.00614-09
    Journal articles | 2010
    Professor Ruiting Lan
    Lan R, 2010, 'Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis', Emerging Infectious Diseases, vol. 16, pp. 297 - 300, http://dx.doi.org/10.3201/eid1602.081707
    Journal articles | 2010
    Professor Ruiting Lan
    Lam C; Octavia S; Reeves PR; Wang L; Lan R, 2010, 'Evolution of seventh cholera pandemic and origin of 1991 epidemic, Latin America', Emerging Infectious Diseases, vol. 16, pp. 1130 - 1132, http://dx.doi.org/10.3201/eid1607.100131
    Journal articles | 2010
    Professor Ruiting Lan
    Ballouz S; Lan R; Francis AR; Tanaka M, 2010, 'Conditions for the evolution of gene clusters in bacterial genomes.', PLoS Computational Biology, vol. 6, pp. e1000672 - e1000672, http://dx.doi.org/10.1371/journal.pcbi.1000672
    Journal articles | 2010
    Professor Ruiting Lan
    Octavia S; Lan R, 2010, 'Single nucleotide polymorphism typing of global Salmonella enterica serovar Typhi isolates by use of a hairpin primer real-time PCR assay', Journal of Clinical Microbiology, vol. 48, pp. 3504 - 3509, http://dx.doi.org/10.1128/JCM.00709-10
    Journal articles | 2009
    Professor Ruiting Lan
    Tay CY; Mitchell HM; Dong Q; Goh K; Dawes IW; Lan R, 2009, 'Population structure of Helicobacter pylori among ethnic groups in Malaysia: Recent acquisition of the bacterium by the Malay population', BMC Microbiology, vol. 9, pp. 126, http://dx.doi.org/10.1186/1471-2180-9-126
    Journal articles | 2009
    Professor Ruiting Lan
    Lan R; Reeves PR; Octavia S, 2009, 'Population structure, origins and evolution of major Salmonella enterica clones', Infection Genetics and Evolution, vol. 9, pp. 996 - 1005, http://dx.doi.org/10.1016/j.meegid.2009.04.011
    Journal articles | 2009
    Professor Ruiting Lan
    Octavia S; Lan R, 2009, 'Multiple-locus variable-number tandem-repeat analysis of Salmonella enterica serovar Typhi', Journal of Clinical Microbiology, vol. 47, pp. 2369 - 2376, http://dx.doi.org/10.1128/JCM.00223-09
    Journal articles | 2009
    Professor Ruiting Lan
    Chan W; Maharjan RP; Reeves PR; Sintchenko V; Gilbert GL; Lan R, 2009, 'Rapid and accurate typing of Bordetella pertussis targeting genes encoding acellular vaccine antigens using real time PCR and High Resolution Melt analysis', Journal of Microbiological Methods, vol. 77, pp. 326 - 329, http://dx.doi.org/10.1016/j.mimet.2009.03.007
    Journal articles | 2009
    Professor Ruiting Lan
    Lin FP; Coiera E; Lan R; Sintchenko V, 2009, 'In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles.', BMC bioinformatics, vol. 10, pp. 86 - 86, http://dx.doi.org/10.1186/1471-2105-10-86
    Journal articles | 2009
    Professor Ruiting Lan
    Lan R; Reeves PR; Octavia S, 2009, 'WITHDRAWN: Population structure, origins and evolution of major Salmonella enterica clones', Infection, Genetics and Evolution, http://dx.doi.org/10.1016/j.meegid.2009.02.004
    Journal articles | 2008
    Professor Ruiting Lan
    Feng L; Reeves PR; Lan R; Ren Y; Gao C; Zhou Z; Ren Y; Cheng J; Weng W; Wang J; Qian WL; Li D; Wang L, 2008, 'A recalibrated molecular clock and independent origins for the cholera pandemic clones', PLoS One, vol. 3, pp. 4053 - 4063, http://dx.doi.org/10.1371/journal.pone.0004053
    Journal articles | 2008
    Professor Ruiting Lan
    Maharjan RP; Gu C; Reeves PR; Sintchenko V; Gilbert GL; Lan R, 2008, 'Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing', Research in Microbiology, vol. 159, pp. 602 - 608, http://dx.doi.org/10.1016/j.resmic.2008.08.004
    Journal articles | 2008
    Professor Ruiting Lan
    Tay CY; Reeves PR; Lan R, 2008, 'Importation of the major pilin TcpA gene and frequent recombination drive the divergence of the Vibrio pathogenicity island in Vibrio cholerae', FEMS Microbiology Letters, vol. 289, pp. 210 - 218, http://dx.doi.org/10.1111/j.1574-6968.2008.01385.x
    Journal articles | 2007
    Professor Ruiting Lan
    Octavia S; Lan R, 2007, 'Single-Nucleotide-Polymorphism Typing and Genetic Relationships of Salmonella enterica Serovar Typhi Isolates', Journal of Clinical Microbiology, vol. 45, pp. 3795 - 3801, http://dx.doi.org/10.1128/JCM.00720-07
    Journal articles | 2007
    Professor Ruiting Lan
    Lan R; Stevenson G; Donohoe K; Ward LA; Reeves PR, 2007, 'Molecular markers with potential to replace phage typing for Salmonella enterica serovar typhimurium', Journal of Microbiological Methods, vol. 68, pp. 145 - 156, http://dx.doi.org/10.1016/j.mimet.2006.07.004
    Journal articles | 2007
    Professor Ruiting Lan
    Zaghloul L; Tang C; Chin H; Bek EJ; Lan R; Tanaka M, 2007, 'The distribution of insertion sequences in the genome of Shigella flexneri strain 2457T', FEMS Microbiology Letters, vol. 277, pp. 197 - 204, http://dx.doi.org/10.1111/j.1574-6968.2007.00957.x
    Journal articles | 2006
    Professor Ruiting Lan
    Wirth T; Falush D; Lan R; Colles F; Mensa P; Wieler L; Karch H; Reeves PR; Maiden M; Ochman H; Achtman M, 2006, 'Sex and virulence in Escherichia coli: an evolutionary perspective', Molecular Microbiology, vol. 60, pp. 1136 - 1151, http://dx.doi.org/10.1111/j.1365-2958.2006.05172.x
    Journal articles | 2006
    Professor Ruiting Lan
    Octavia S; Lan R, 2006, 'Frequent recombination and low level of clonality within Salmonella enterica subspecies I', Microbiology, vol. 152, pp. 1099 - 1108, http://dx.doi.org/10.1099/mic.0.28486-0
    Journal articles | 2006
    Professor Ruiting Lan
    Hu H; Lan R; Reeves PR, 2006, 'Adaptation of multilocus sequencing for studying variation within a major clone: Evolutionary relationships of Salmonella enterica serovar typhimurium', Genetics, vol. 172, pp. 743 - 750, http://dx.doi.org/10.1534/genetics.105.046466
    Journal articles | 2005
    Professor Ruiting Lan
    Salim A; Lan R; Reeves PR, 2005, 'Vibrio cholerae pathogenic clones', Emerging Infectious Diseases, vol. 11, pp. 1758 - 1760, http://dx.doi.org/10.3201/eid1111.041170
    Journal articles | 2005
    Professor Ruiting Lan
    Tominaga A; Lan R; Reeves PR, 2005, 'Evolutionary changes of the flhDC flagellar master operon in Shigella strains', Journal of Bacteriology, vol. 187, pp. 4295 - 4302, http://dx.doi.org/10.1128/JB.187.12.4295-4302.2005
    Journal articles | 2004
    Professor Ruiting Lan
    Lan R; Alles MC; Donohoe K; Martinez M; Reeves PR, 2004, 'Molecular evolutionary relationships of enteroinvasive Escherichia coli and Shigella spp', Infection and Immunity, vol. 72, pp. 5080 - 5088, http://dx.doi.org/10.1128/IAI.72.9.5080-5088.2004
    Journal articles | 2004
    Professor Ruiting Lan
    Rezwan F; Lan R; Reeves PR, 2004, 'Molecular basis of the indole-negative reaction in Shigella strains:extensive damages to the tna operon by insertion sequences', Journal of Bacteriology, vol. 186, pp. 7460 - 7465, http://dx.doi.org/10.1128/JB.186.21.7460-7465.2004
    Journal articles | 2003
    Professor Ruiting Lan
    Lan R; Davison AM; Reeves PR; Ward LR, 2003, 'AFLP analysis of Salmonella enterica serovar Typhimurium isolates of phage types DT 9 and DT 135: Diversity within phage types and its epidemiological significance', Microbes and Infection, vol. 5, pp. 841 - 850, http://dx.doi.org/10.1016/S1286-4579(03)00174-6
    Journal articles | 2003
    Professor Ruiting Lan
    Lan R; Stevenson G; Reeves PR, 2003, 'Comparison of two major forms of the Shigella virulence plasmid pINV: positive selection is a major force driving the divergence', Infection and Immunity, vol. 71, pp. 6298 - 6306, http://dx.doi.org/10.1128/IAI.71.11.6298-6306.2003
    Journal articles | 2002
    Professor Ruiting Lan
    Lan R; Reeves PR, 2002, 'Escherichia coli in disguise: Molecular origins of Shigella', Microbes and Infection, vol. 4, pp. 1125 - 1132, http://dx.doi.org/10.1016/S1286-4579(02)01637-4
    Journal articles | 2002
    Professor Ruiting Lan
    Lan R; Reeves PR, 2002, 'Pandemic spread of cholera: Genetic diversity and relationships within the seventh pandemic clone of Vibrio cholerae determined by amplified fragment length polymorphism', Journal of Clinical Microbiology, vol. 40, pp. 172 - 181, http://dx.doi.org/10.1128/JCM.40.1.172-181.2002
    Journal articles | 2002
    Professor Ruiting Lan
    Hu H; Lan R; Reeves PR, 2002, 'Fluorescent amplified fragment length polymorphism analysis of Salmonella enterica serovar Typhimurium reveals phage-type-specific markers and potential for microarray typing', Journal of Clinical Microbiology, vol. 40, pp. 3406 - 3415, http://dx.doi.org/10.1128/JCM.40.9.3406-3415.2002
    Journal articles | 2001
    Professor Ruiting Lan
    Lan R; Lumb B; Ryan D; Reeves PR, 2001, 'Molecular evolution of large virulence plasmid in Shigella clones and enteroinvasive Escherichia coli', Infection and Immunity, vol. 69, pp. 6303 - 6309, http://dx.doi.org/10.1128/IAI.69.10.6303-6309.2001
    Journal articles | 2001
    Professor Ruiting Lan
    Karaolis DKR; Lan R; Kaper JB; Reeves PR, 2001, 'Comparison of Vibrio cholerae pathogenicity islands in sixth and seventh pandemic strains', Infection and Immunity, vol. 69, pp. 1947 - 1952, http://dx.doi.org/10.1128/IAI.69.3.1947-1952.2001
    Journal articles | 2001
    Professor Ruiting Lan
    Lan R; Reeves PR, 2001, 'When does a clone deserve a name? A perspective on bacterial species based on population genetics', Trends in Microbiology, vol. 9, pp. 419 - 424, http://dx.doi.org/10.1016/S0966-842X(01)02133-3
    Journal articles | 2000
    Professor Ruiting Lan
    Pupo GM; Lan R; Reeves PR, 2000, 'Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics', Proceedings of the National Academy of Sciences of the United States of America, vol. 97, pp. 10567 - 10572, http://dx.doi.org/10.1073/pnas.180094797
    Journal articles | 2000
    Professor Ruiting Lan
    Stevenson G; Lan R; Reeves PR, 2000, 'The colanic acid gene cluster of Salmonella enterica has a complex history', FEMS Microbiology Letters, vol. 191, pp. 11 - 16, http://dx.doi.org/10.1016/S0378-1097(00)00361-X
    Journal articles | 2000
    Professor Ruiting Lan
    Lan R; Reeves PR, 2000, 'Intraspecies variation in bacterial genomes: The need for a species genome concept', Trends in Microbiology, vol. 8, pp. 396 - 401, http://dx.doi.org/10.1016/S0966-842X(00)01791-1
    Journal articles | 2000
    Professor Ruiting Lan
    Pupo GM; Lan R; Reeves PR; Baverstock PR, 2000, 'Population genetics of Escherichia coli in a natural population of native Australian rats', Environmental Microbiology, vol. 2, pp. 594 - 610, http://dx.doi.org/10.1046/j.1462-2920.2000.00142.x
    Journal articles | 2000
    Professor Ruiting Lan
    Lan R; Reeves PR, 2000, 'Unique adaptor design for AFLP fingerprinting', BioTechniques, vol. 29, pp. 745 - 750, http://dx.doi.org/10.2144/00294bm14
    Journal articles | 1999
    Professor Ruiting Lan
    Byun R; Elbourne LDH; Lan R; Reeves PR, 1999, 'Evolutionary relationships of pathogenic clones of VIbrio cholerae by sequence analysis of four housekeeping genes', Infection and Immunity, vol. 67, pp. 1116 - 1124, http://dx.doi.org/10.1128/iai.67.3.1116-1124.1999
    Journal articles | 1998
    Professor Ruiting Lan
    Pérez Luz S; Rodríguez-Valera F; Lan R; Reeves PR, 1998, 'Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies', Journal of Bacteriology, vol. 180, pp. 2144 - 2151, http://dx.doi.org/10.1128/jb.180.8.2144-2151.1998
    Journal articles | 1998
    Professor Ruiting Lan
    Lan R; Reeves PR, 1998, 'Recombination between rRNA operons created most of the ribotype variation observed in the seventh pandemic clone of Vibrio cholerae', Microbiology, vol. 144, pp. 1213 - 1221, http://dx.doi.org/10.1099/00221287-144-5-1213
    Journal articles | 1998
    Professor Ruiting Lan
    Reeves PR; Lan R, 1998, 'Cholera in the 1990s', British Medical Bulletin, vol. 54, pp. 611 - 623, http://dx.doi.org/10.1093/oxfordjournals.bmb.a011714
    Journal articles | 1998
    Professor Ruiting Lan
    Lan R; Reeves PR, 1998, 'Molecular Basis of Ribotype Variation in the Seventh Pandemic Clone and its O139 Variant of Vibrio cholerae', Memorias do Instituto Oswaldo Cruz, vol. 93, pp. 595 - 599, http://dx.doi.org/10.1590/s0074-02761998000500007
    Journal articles | 1997
    Professor Ruiting Lan
    Pupo GM; Karaolis DKR; Lan R; Reeves PR, 1997, 'Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies', Infection and Immunity, vol. 65, pp. 2685 - 2692, http://dx.doi.org/10.1128/iai.65.7.2685-2692.1997
    Journal articles | 1996
    Professor Ruiting Lan
    Lan R; Reeves PR, 1996, 'Gene transfer is a major factor in bacterial evolution', Molecular Biology and Evolution, vol. 13, pp. 47 - 55, http://dx.doi.org/10.1093/oxfordjournals.molbev.a025569
    Journal articles | 1995
    Professor Ruiting Lan
    Karaolis DKR; Lan R; Reeves PR, 1995, 'The sixth and seventh cholera pandemics are due to independent clones separately derived from environmental, nontoxigenic, non-O1 Vibrio cholerae', Journal of Bacteriology, vol. 177, pp. 3191 - 3198, http://dx.doi.org/10.1128/jb.177.11.3191-3198.1995
    Journal articles | 1994
    Professor Ruiting Lan
    Karaolis DKR; Lan R; Reeves PR, 1994, 'Sequence variation in Shigella sonnei (Sonnei), a pathogenic clone of Escherichia coli, over four continents and 41 years', Journal of Clinical Microbiology, vol. 32, pp. 796 - 802, http://dx.doi.org/10.1128/jcm.32.3.796-802.1994
    Journal articles | 1994
    Professor Ruiting Lan
    Lan R; Greenoak GE; Moran C, 1994, 'PYRIMIDINE DIMER INDUCTION AND REMOVAL IN THE EPIDERMIS OF HAIRLESS MICE: INEFFICIENT REPAIR IN THE GENOME OVERALL AND RAPID REPAIR IN THE H‐ras SEQUENCE', Photochemistry and Photobiology, vol. 59, pp. 356 - 361, http://dx.doi.org/10.1111/j.1751-1097.1994.tb05047.x
    Journal articles | 1994
    Professor Ruiting Lan
    Karaolis DKR; Lan R; Reeves PR, 1994, 'Molecular evolution of the seventh-pandemic clone of Vibrio cholerae and its relationship to other pandemic and epidemic V. cholerae isolates', Journal of Bacteriology, vol. 176, pp. 6199 - 6206, http://dx.doi.org/10.1128/jb.176.20.6199-6206.1994
    Journal articles | 1994
    Professor Ruiting Lan
    Thampapillai G; Lan R; Reeves PR, 1994, 'Molecular evolution in the gnd locus of Salmonella enterica', Molecular Biology and Evolution, vol. 11, pp. 813 - 828
    Journal articles | 1994
    Professor Ruiting Lan
    Reeves PR; Farnell L; Lan R, 1994, 'Multicomp: A program for preparing sequence data for phylogenetic analysis', Bioinformatics, vol. 10, pp. 281 - 284, http://dx.doi.org/10.1093/bioinformatics/10.3.281
  • Conference Abstracts | 2013
    Professor Ruiting Lan
    Mahendran V; Lee HY; Tan YS; Riordan SM; Grimm MC; Day AS; Lemberg DA; Octavia S; Lan R; Zhang L, 2013, 'The association between a tight junction toxin gene in Campylobacter concisus and inflammatory bowel disease', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY-BLACKWELL, Vol. 28, pp. 14 - 14, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000324106900026&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

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