Associate Professor Shafagh Waters

Associate Professor Shafagh Waters

Associate Professor

PhD, Australian National University

MSc (Distinction), University of Otago, New Zealand 

BSc, The University of Auckland, New Zealand

 

Medicine & Health
School of Biomedical Sciences

 

I develop human organoid models and regenerative epithelial therapies to enable precision medicine and translational treatment strategies for cystic fibrosis, bronchiectasis and related chronic airway diseases.

I am a Scientia Associate Professor in the School of Biomedical Sciences at UNSW Sydney and Head of the Regeneration and Stem Cell Translational Research Laboratory. My research program focuses on developing human stem cell and organoid systems that allow direct investigation of disease biology and therapeutic response in human tissue. I serve as Academic Lead of the UNSW node of the NSW Organoid Innovation Centre and hold a leadership role in the Non-Animal Technologies Network (NAT-Net), a NSW Government–supported initiative advancing human-relevant biomedical research systems across Australia.

My laboratory develops patient-derived organoid models from airway, gut, liver and other epithelial tissues to investigate the mechanisms underlying chronic respiratory disease. These systems enable mechanistic investigation of cystic fibrosis, bronchiectasis and primary ciliary dyskinesia using advanced functional assays, genome engineering and multi-omics approaches. A major focus of the program is the development of precision medicine platforms capable of predicting individual therapeutic response and identifying biomarkers of disease progression.

A central objective of my research is to translate stem cell technologies into clinically relevant therapies. My group is developing regenerative airway epithelial transplantation strategies and biomaterial-supported epithelial repair approaches aimed at restoring airway function in chronic respiratory disease. These studies integrate stem cell biology, biomaterials engineering and clinical collaboration to advance regenerative airway therapies toward clinical implementation.

Through national and international collaborations with clinicians, research institutes and industry partners, my work contributes to advancing organoid-based precision medicine, regenerative respiratory therapeutics and the adoption of non-animal technologies for biomedical research. My research has been recognised through awards including the Tall Poppy Science Award and the UNSW Faculty of Medicine & Health Innovation Award.

 

Phone
+61 (2)93856961
Location
The School of Medical Sciences is located in the Wallace Wurth Building (upper campus of UNSW) which is accessible via Gate 9, High Street, Randwick.
  • Book Chapters | 2018
    McIntyre K; Waters S; Waters P, 2018, 'Sex Chromosomes', in Skinner MK (ed.), Encyclopedia of Reproduction, Academic Press, pp. 238 - 244, http://dx.doi.org/10.1016/B978-0-12-801238-3.64459-8
    Book Chapters | 2018
    McIntyre KL; Waters SA; Waters PD, 2018, 'Sex Chromosomes', in Encyclopedia of Reproduction Volume 1 6 Second Edition, pp. 238 - 244, http://dx.doi.org/10.1016/B978-0-12-801238-3.64459-8
    Book Chapters | 2010
    Al Nadaf S; Waters PD; Deakin JE; Graves JAM, 2010, 'Marsupial genetics reveals insights into evolution of mammalian X chromosome inactivation', in Marsupial Genetics and Genomics, pp. 259 - 280, http://dx.doi.org/10.1007/978-90-481-9023-2_13
  • Journal articles | 2025
    Fawcett LK; Chew ZA; Schneider-Futschik EK; Allan KM; Patel HR; Jaffe A; Waters S, 2025, 'Predictive capacity of paediatric nasal epithelial cells in sequential CFTR modulator therapy', Thorax, http://dx.doi.org/10.1136/thorax-2025-223153
    Journal articles | 2025
    Fawcett LK; Waters SA; Jaffe A, 2025, 'The equitable challenges to quality use of modulators for cystic fibrosis in Australia', Medical Journal of Australia, 222, pp. 4 - 9, http://dx.doi.org/10.5694/mja2.52527
    Journal articles | 2025
    Pesce E; Tomati V; Capurro V; Lena M; Pastorino C; Astore M; Kuyucak S; Chevalier B; Sondo E; Cresta F; Dighero A; Terlizzi V; Fevola C; Costa S; Lucanto MC; Daccò V; Claut L; Ficili F; Fabrizzi B; Bocciardi R; Zara F; Castellani C; Galietta LJV; Waters SA; Hinzpeter A; Pedemonte N, 2025, 'In silico, in vitro and ex vivo characterization of cystic fibrosis transmembrane conductance regulator pathogenic variants localized in the fourth intracellular loop and their rescue by modulators', British Journal of Pharmacology, 182, pp. 6063 - 6080, http://dx.doi.org/10.1111/bph.70176
    Journal articles | 2025
    Pesce E; Tomati V; Capurro V; Lena M; Pastorino C; Astore M; Kuyyucak S; Chevalier B; Sondo E; Cresta F; Terlizzi V; Costa S; Lucanto MC; Daccò V; Claut L; Ficili F; Bocciardi R; Zara F; Castellani C; Galietta LJ; Waters SA; Hinzpeter A; Pedemonte N, 2025, 'WS14.02In silico, in vitro and ex vivo characterization of CFTR pathogenic variants localized in the Fourth Intracellular Loop and their rescue by modulators', Journal of Cystic Fibrosis, 24, pp. S27 - S28, http://dx.doi.org/10.1016/j.jcf.2025.03.571
    Journal articles | 2024
    Carrera Montoya J; Collett S; Fernandez Ruiz D; Earnest L; Edeling MA; Yap AHY; Wong CY; Cooney JP; Davidson KC; Roberts J; Rockman S; Tran BM; McAuley JL; Deliyannis G; Grimley SL; Purcell DFJ; Waters SA; Godfrey DI; Hans D; Pellegrini M; Mackenzie JM; Vincan E; Heath WR; Torresi J, 2024, 'Human Nasal Epithelium Organoids for Assessing Neutralizing Antibodies to a Protective SARS-CoV-2 Virus-like Particle Vaccine', Organoids, 3, pp. 18 - 31, http://dx.doi.org/10.3390/organoids3010002
    Journal articles | 2024
    Chang JJY; Grimley SL; Tran BM; Deliyannis G; Tumpach C; Nguyen ANT; Steinig E; Zhang JS; Schröder J; Caly L; McAuley J; Wong SL; Waters SA; Stinear TP; Pitt ME; Purcell D; Vincan E; Coin LJM, 2024, 'Uncovering strain- and age-dependent innate immune responses to SARS-CoV-2 infection in air-liquid-interface cultured nasal epithelia', Iscience, 27, http://dx.doi.org/10.1016/j.isci.2024.110009
    Journal articles | 2024
    Lister NC; Milton AM; Patel HR; Waters SA; Hanrahan BJ; McIntyre KL; Livernois AM; Horspool WB; Wee LK; Ringel AR; Mundlos S; Robson MI; Shearwin-Whyatt L; Grützner F; Marshall Graves JA; Ruiz-Herrera A; Waters PD, 2024, 'Incomplete transcriptional dosage compensation of chicken and platypus sex chromosomes is balanced by post-transcriptional compensation', Proceedings of the National Academy of Sciences of the United States of America, 121, http://dx.doi.org/10.1073/pnas.2322360121
    Journal articles | 2024
    McIntyre KL; Waters SA; Zhong L; Hart-Smith G; Raftery M; Chew ZA; Patel HR; Graves JAM; Waters PD, 2024, 'Identification of the RSX interactome in a marsupial shows functional coherence with the Xist interactome during X inactivation', Genome Biology, 25, http://dx.doi.org/10.1186/s13059-024-03280-0
    Journal articles | 2024
    Umashankar B; Eliasson L; Ooi CY; Kim KW; Shaw JAM; Waters SA, 2024, 'Beyond insulin: Unraveling the complex interplay of ER stress, oxidative damage, and CFTR modulation in CFRD', Journal of Cystic Fibrosis, 23, pp. 842 - 852, http://dx.doi.org/10.1016/j.jcf.2024.06.004
    Journal articles | 2024
    Waters S; Middleton PG, 2024, 'Rectal organoid morphometric analysis (ROMA)-re: Optimising measurements automatically', Thorax, 79, pp. 801 - 802, http://dx.doi.org/10.1136/thorax-2024-221829
    Journal articles | 2023
    Allan KM; Astore MA; Kardia E; Wong SL; Fawcett LK; Bell JL; Visser S; Chen PC; Griffith R; Jaffe A; Sivam S; Vittorio O; Kuyucak S; Waters SA, 2023, 'Q1291H-CFTR molecular dynamics simulations and ex vivo theratyping in nasal epithelial models and clinical response to elexacaftor/tezacaftor/ivacaftor in a Q1291H/F508del patient', Frontiers in Molecular Biosciences, 10, http://dx.doi.org/10.3389/fmolb.2023.1148501
    Journal articles | 2023
    Fawcett LK; Jaffe A; Waters SA, 2023, 'WS14.02 Cystic fibrosis personalised medicine; paediatric in vitro airway cell models to predict CFTR modulator patient outcomes', Journal of Cystic Fibrosis, 22, pp. S28 - S28, http://dx.doi.org/10.1016/s1569-1993(23)00266-7
    Journal articles | 2023
    Fawcett LK; Turgutoglu N; Allan KM; Belessis Y; Widger J; Jaffe A; Waters SA, 2023, 'Comparing Cytology Brushes for Optimal Human Nasal Epithelial Cell Collection: Implications for Airway Disease Diagnosis and Research', Journal of Personalized Medicine, 13, pp. 864, http://dx.doi.org/10.3390/jpm13050864
    Journal articles | 2023
    Molley TG; Jiang S; Ong L; Kopecky C; Ranaweera CD; Jalandhra GK; Milton L; Kardia E; Zhou Z; Rnjak-Kovacina J; Waters SA; Toh YC; Kilian KA, 2023, 'Gas-modulating microcapsules for spatiotemporal control of hypoxia', Proceedings of the National Academy of Sciences of the United States of America, 120, pp. e2217557120, http://dx.doi.org/10.1073/pnas.2217557120
    Journal articles | 2023
    Nguyen AK; Molley TG; Kardia E; Ganda S; Chakraborty S; Wong SL; Ruan J; Yee BE; Mata J; Vijayan A; Kumar N; Tilley RD; Waters SA; Kilian KA, 2023, 'Hierarchical assembly of tryptophan zipper peptides into stress-relaxing bioactive hydrogels', Nature Communications, 14, http://dx.doi.org/10.1038/s41467-023-41907-1
    Journal articles | 2023
    Poursani EM; Mercatelli D; Raninga P; Bell JL; Saletta F; Kohane FV; Neumann DP; Zheng Y; Rouaen JRC; Jue TR; Michniewicz FT; Schadel P; Kasiou E; Tsoli M; Cirillo G; Waters S; Shai-Hee T; Cazzoli R; Brettle M; Slapetova I; Kasherman M; Whan R; Souza-Fonseca-Guimaraes F; Vahdat L; Ziegler D; Lock JG; Giorgi FM; Khanna KK; Vittorio O, 2023, 'Copper chelation suppresses epithelial-mesenchymal transition by inhibition of canonical and non-canonical TGF-β signaling pathways in cancer', Cell and Bioscience, 13, pp. 132, http://dx.doi.org/10.1186/s13578-023-01083-7
    Journal articles | 2023
    Westhaus A; Cabanes-Creus M; Dilworth KL; Zhu E; Salas Gómez D; Navarro RG; Amaya AK; Scott S; Kwiatek M; McCorkindale AL; Hayman TE; Frahm S; Perocheau DP; Tran BM; Vincan E; Wong SL; Waters SA; Riddiough GE; Perini MV; Wilson LOW; Baruteau J; Diecke S; González-Aseguinolaza G; Santilli G; Thrasher AJ; Alexander IE; Lisowski L, 2023, 'Assessment of Pre-Clinical Liver Models Based on Their Ability to Predict the Liver-Tropism of Adeno-Associated Virus Vectors', Human Gene Therapy, 34, pp. 273 - 288, http://dx.doi.org/10.1089/hum.2022.188
    Journal articles | 2023
    Wong SL; Kardia E; Vijayan A; Umashankar B; Pandzic E; Zhong L; Jaffe A; Waters SA, 2023, 'Molecular and Functional Characteristics of Airway Epithelium under Chronic Hypoxia', International Journal of Molecular Sciences, 24, http://dx.doi.org/10.3390/ijms24076475
    Journal articles | 2023
    van Dorst J; Waters S; Allan K; Thomas T; Jaffe A; Ooi KCY, 2023, 'WS08.06 Pilot study evaluating the potential of Akkermansia muciniphila and Faecalibacterium prausnitzii as cystic fibrosis-specific probiotics utilising patient-derived organoid models', Journal of Cystic Fibrosis, 22, pp. S17 - S18, http://dx.doi.org/10.1016/s1569-1993(23)00234-5
    Journal articles | 2022
    Allan KM; Astore MA; Fawcett LK; Wong SL; Chen PC; Griffith R; Jaffe A; Kuyucak S; Waters SA, 2022, 'S945L-CFTR molecular dynamics, functional characterization and tezacaftor/ivacaftor efficacy in vivo and in vitro in matched pediatric patient-derived cell models', Frontiers in Pediatrics, 10, pp. 1062766, http://dx.doi.org/10.3389/fped.2022.1062766
    Journal articles | 2022
    Astore MA; Chen P-C; Waters S; Kuyucak S, 2022, 'Computer modelling the root cause of cystic fibrosis', BIOPHYSICAL JOURNAL, 121, pp. 506A - 506A
    Journal articles | 2022
    Dunnet MJ; Ortega-Recalde OJ; Waters SA; Weeks RJ; Morison IM; Hore TA, 2022, 'Leukocyte-specific DNA methylation biomarkers and their implication for pathological epigenetic analysis', Epigenetics Communications, 2, http://dx.doi.org/10.1186/s43682-022-00011-z
    Journal articles | 2022
    Tran BM; Grimley SL; McAuley JL; Hachani A; Earnest L; Wong SL; Caly L; Druce J; Purcell DFJ; Jackson DC; Catton M; Nowell CJ; Leonie L; Deliyannis G; Waters SA; Torresi J; Vincan E, 2022, 'Air-Liquid-Interface Differentiated Human Nose Epithelium: A Robust Primary Tissue Culture Model of SARS-CoV-2 Infection', International Journal of Molecular Sciences, 23, http://dx.doi.org/10.3390/ijms23020835
    Journal articles | 2022
    Wong SL; Awatade NT; Astore MA; Allan KM; Carnell MJ; Slapetova I; Chen PC; Capraro A; Fawcett LK; Whan RM; Griffith R; Ooi CY; Kuyucak S; Jaffe A; Waters SA, 2022, 'Molecular dynamics and functional characterization of I37R-CFTR lasso mutation provide insights into channel gating activity', Iscience, 25, pp. 103710, http://dx.doi.org/10.1016/j.isci.2021.103710
    Journal articles | 2022
    Wong SL; Awatade NT; Astore MA; Allan KM; Carnell MJ; Slapetova I; Chen PC; Setiadi J; Pandzic E; Fawcett LK; Widger JR; Whan RM; Griffith R; Ooi CY; Kuyucak S; Jaffe A; Waters SA, 2022, 'Molecular Dynamics and Theratyping in Airway and Gut Organoids Reveal R352Q-CFTR Conductance Defect', American Journal of Respiratory Cell and Molecular Biology, 67, pp. 99 - 111, http://dx.doi.org/10.1165/rcmb.2021-0337OC
    Journal articles | 2022
    Wong SL; Pandzic E; Kardia E; Allan KM; Whan RM; Waters SA, 2022, 'Quantifying Intracellular Viral Pathogen: Specimen Preparation, Visualization and Quantification of Multiple Immunofluorescent Signals in Fixed Human Airway Epithelium Cultured at Air-Liquid Interface', Journal of Personalized Medicine, 12, http://dx.doi.org/10.3390/jpm12101668
    Journal articles | 2021
    Allan KM; Wong SL; Fawcett LK; Capraro A; Jaffe A; Herbert C; Pandzic E; Waters SA, 2021, 'Collection, Expansion, and Differentiation of Primary Human Nasal Epithelial Cell Models for Quantification of Cilia Beat Frequency', Journal of Visualized Experiments, http://dx.doi.org/10.3791/63090-v
    Journal articles | 2021
    Allan KM; Wong SL; Fawcett LK; Capraro A; Jaffe A; Herbert C; Pandzic E; Waters SA, 2021, 'Collection, expansion, and differentiation of primary human nasal epithelial cell models for quantification of cilia beat frequency', Journal of Visualized Experiments, http://dx.doi.org/10.3791/63090
    Journal articles | 2021
    Allen K; Jaffe A; Waters S; Allan K, 2021, 'Treatment of Cystic Fibrosis: From Gene- to Cell-Based Therapies', Frontiers in Pharmacology, 12, pp. 639475, http://dx.doi.org/10.3389/fphar.2021.639475
    Journal articles | 2021
    Awatade N; Wong S; Capraro A; Pandzic E; Slapetova I; Zhong L; Fawcett L; Whan R; Jaffe A; Waters S, 2021, 'Significant functional differences in differentiated Conditionally Reprogrammed (CRC)- and Feeder-free Dual SMAD inhibited-expanded human nasal epithelial cells', Journal of Cystic Fibrosis, 20, pp. 364 - 371, http://dx.doi.org/10.1016/j.jcf.2020.12.019
    Journal articles | 2021
    Azad AKM; Fatima S; Capraro A; Waters SA; Vafaee F, 2021, 'Integrative resource for network-based investigation of COVID-19 combinatorial drug repositioning and mechanism of action', Patterns, 2, pp. 100325, http://dx.doi.org/10.1016/j.patter.2021.100325
    Journal articles | 2021
    Capraro A; Wong S; Adhikari A; Allan K; Patel H; Zhong L; Raftery M; Jaffe A; Yeang M; Aggarwal A; Wu L; Pandzic E; Whan R; Turville S; Vittorio O; Bull R; Kaakoush N; Rawlinson W; Tedla N; Vafaee F; Waters S, 2021, 'Ageing impairs the airway epithelium defence response to SARS-CoV-2', , http://dx.doi.org/10.1101/2021.04.05.437453
    Journal articles | 2021
    Deshpande NP; Riordan SM; Gorman CJ; Nielsen S; Russell TL; Correa-Ospina C; Fernando BSM; Waters SA; Castaño-Rodríguez N; Man SM; Tedla N; Wilkins MR; Kaakoush NO, 2021, 'Multi-omics of the esophageal microenvironment identifies signatures associated with progression of Barrett’s esophagus', Genome Medicine, 13, pp. 133, http://dx.doi.org/10.1186/s13073-021-00951-6
    Journal articles | 2021
    Fawcett LK; Wakefield CE; Sivam S; Middleton PG; Wark P; Widger J; Jaffe A; Waters SA, 2021, 'Avatar acceptability: Views from the australian cystic fibrosis community on the use of personalised organoid technology to guide treatment decisions', Erj Open Research, 7, pp. 1 - 10, http://dx.doi.org/10.1183/23120541.00448-2020
    Journal articles | 2021
    Prentice BJ; Jaffe A; Hameed S; Verge CF; Waters S; Widger J, 2021, 'Cystic fibrosis-related diabetes and lung disease: An update', European Respiratory Review, 30, pp. 200293, http://dx.doi.org/10.1183/16000617.0293-2020
    Journal articles | 2021
    Villamizar O; Waters SA; Scott T; Grepo N; Jaffe A; Morris KV, 2021, 'Mesenchymal Stem Cell exosome delivered Zinc Finger Protein activation of cystic fibrosis transmembrane conductance regulator', Journal of Extracellular Vesicles, 10, pp. e12053, http://dx.doi.org/10.1002/jev2.12053
    Journal articles | 2020
    Awatade N; Wong S; Pandzic E; Slapetova I; Capraro A; Zhong L; Turgutoglu N; Fawcett L; Whan R; Jaffe A; Waters S, 2020, 'Significant functional differences despite morphological and molecular similarity in fully differentiated matched Conditionally Reprogrammed (CRC) and Feeder free dual SMAD inhibited expanded human nasal epithelial cells', , http://dx.doi.org/10.1101/2020.05.29.120006
    Journal articles | 2020
    Capraro A; O‘Meally D; Waters SA; Patel HR; Georges A; Waters PD, 2020, 'MicroRNA dynamics during hibernation of the Australian central bearded dragon (Pogona vitticeps)', Scientific Reports, 10, pp. 17854, http://dx.doi.org/10.1038/s41598-020-73706-9
    Journal articles | 2020
    Capraro A; Whan R; Thomas S; Jaffe A; Bridge W; Waters S; Hart-Smith G; Zhong L; Pandzic E; Fernando BSM; Awatade N; Wong S, 2020, 'Novel Antioxidant Therapy with the Immediate Precursor to Glutathione, -Glutamylcysteine (GGC), Ameliorates LPS-Induced Cellular Stress in In Vitro 3D-Differentiated Airway Model from Primary Cystic Fibrosis Human Bronchial Cells', Antioxidants, 9, pp. 1 - 19, http://dx.doi.org/10.3390/antiox9121204
    Journal articles | 2020
    Coffey MJ; Mckay IR; Doumit M; Chuang S; Adams S; Stelzer-Braid S; Waters SA; Kasparian NA; Thomas T; Jaffe A; Katz T; Ooi CY, 2020, 'Evaluating the Alimentary and Respiratory Tracts in Health and disease (EARTH) research programme: a protocol for prospective, longitudinal, controlled, observational studies in children with chronic disease at an Australian tertiary paediatric hospital', BMJ Open, 10, pp. e033916, http://dx.doi.org/10.1136/bmjopen-2019-033916
    Journal articles | 2020
    Hewson C; Capraro A; Wong S; Pandzic E; Fernando BSM; Awatade N; Zhong L; Hart-Smith G; Whan R; Thomas S; Jaffe A; Bridge W; Waters S, 2020, 'Novel antioxidant therapy with the immediate precursor to glutathione, γ-glutamylcysteine (GGC), ameliorates LPS-induced cellular stress in anin vitrocystic fibrosis model', , http://dx.doi.org/10.1101/2020.05.27.119990
    Journal articles | 2019
    Coffey MJ; Zhong L; Jaffe A; Ooi CY; Waters S, 2019, 'Tu1872 – The Human Intestinal Proteome in Children with Cystic Fibrosis', Gastroenterology, 156, pp. S - 1153, http://dx.doi.org/10.1016/s0016-5085(19)39855-5
    Journal articles | 2019
    Prentice BJ; Ooi CY; Strachan RE; Hameed S; Ebrahimkhani S; Waters SA; Verge CF; Widger J, 2019, 'Early glucose abnormalities are associated with pulmonary inflammation in young children with cystic fibrosis', Journal of Cystic Fibrosis, 18, pp. 869 - 873, http://dx.doi.org/10.1016/j.jcf.2019.03.010
    Journal articles | 2019
    Sprague D; Waters SA; Kirk JM; Wang JR; Samollow PB; Waters PD; Calabrese JM, 2019, 'Nonlinear sequence similarity between the Xist and Rsx long noncoding RNAs suggests shared functions of tandem repeat domains', RNA, 25, pp. 1004 - 1019, http://dx.doi.org/10.1261/rna.069815.118
    Journal articles | 2019
    Villamizar O; Waters SA; Scott T; Saayman S; Grepo N; Urak R; Davis A; Jaffe A; Morris KV, 2019, 'Targeted Activation of Cystic Fibrosis Transmembrane Conductance Regulator', Molecular Therapy, 27, pp. 1737 - 1748, http://dx.doi.org/10.1016/j.ymthe.2019.07.002
    Journal articles | 2019
    Waters S; Waters P; Capraro A, 2019, 'Waking the sleeping dragon: gene expression profiling reveals adaptive strategies of the hibernating reptile Pogona vitticeps', BMC Genomics, 20, pp. 460, http://dx.doi.org/10.1186/s12864-019-5750-x
    Journal articles | 2018
    Awatade N; Wong S; Jaffe A; Waters S; Fawcett L, 2018, 'Human Primary Epithelial Cell Models: Promising Tools in the Era of Cystic Fibrosis Personalized Medicine', Frontiers in Pharmacology, 9, pp. 1429, http://dx.doi.org/10.3389/fphar.2018.01429
    Journal articles | 2018
    Johnson RN; O’Meally D; Chen Z; Etherington GJ; Ho SYW; Nash WJ; Grueber CE; Cheng Y; Whittington CM; Dennison S; Peel E; Haerty W; O’Neill RJ; Colgan D; Russell TL; Alquezar-Planas DE; Attenbrow V; Bragg JG; Brandies PA; Chong AYY; Deakin JE; Di Palma F; Duda Z; Eldridge MDB; Ewart KM; Hogg CJ; Frankham GJ; Georges A; Gillett AK; Govendir M; Greenwood AD; Hayakawa T; Helgen KM; Hobbs M; Holleley CE; Heider TN; Jones EA; King A; Madden D; Graves JAM; Morris KM; Neaves LE; Patel HR; Polkinghorne A; Renfree MB; Robin C; Salinas R; Tsangaras K; Waters PD; Waters SA; Wright B; Wilkins MR; Timms P; Belov K, 2018, 'Adaptation and conservation insights from the koala genome', Nature Genetics, 50, pp. 1102 - 1111, http://dx.doi.org/10.1038/s41588-018-0153-5
    Journal articles | 2018
    Waters SA; Capraro A; McIntyre KL; Graves JAM; Waters PD, 2018, 'The methylome of vertebrate sex chromosomes', Genes, 9, pp. 230, http://dx.doi.org/10.3390/genes9050230
    Journal articles | 2018
    Waters SA; Livernois AM; Patel H; O’Meally D; Craig JM; Marshall Graves JA; Suter CM; Waters PD, 2018, 'Landscape of DNA methylation on the marsupial x', Molecular Biology and Evolution, 35, pp. 431 - 439, http://dx.doi.org/10.1093/molbev/msx297
    Journal articles | 2017
    Waters SA; McAteer SP; Kudla G; Pang I; Deshpande NP; Amos TG; Leong KW; Wilkins MR; Strugnell R; Gally DL; Tollervey D; Tree JJ, 2017, 'Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E', EMBO Journal, 36, pp. 374 - 387, http://dx.doi.org/10.15252/embj.201694639
    Journal articles | 2016
    Alinejad-Rokny H; Anwar F; Waters SA; Davenport MP; Ebrahimi D, 2016, 'Source of CpG depletion in the HIV-1 genome', Molecular Biology and Evolution, 33, pp. 3205 - 3212, http://dx.doi.org/10.1093/molbev/msw205
    Journal articles | 2015
    Waters SA; Waters PD, 2015, 'Imprinted X chromosome inactivation: evolution of mechanisms in distantly related mammals', AIMS GENETICS, 2, pp. 110 - 126, http://dx.doi.org/10.3934/genet.2015.2.110
    Journal articles | 2014
    Rodríguez-Delgado CL; Waters SA; Waters DP; Waters P, 2014, 'Paternal X inactivation does not correlate with X chromosome evolutionary strata in marsupials', BMC Evolutionary Biology, 14, pp. 267, http://dx.doi.org/10.1186/s12862-014-0267-z
    Journal articles | 2013
    Livernois AM; Waters SA; Deakin JE; Marshall Graves JA; Waters PD, 2013, 'Independent Evolution of Transcriptional Inactivation on Sex Chromosomes in Birds and Mammals', Plos Genetics, 9, pp. e1003635, http://dx.doi.org/10.1371/journal.pgen.1003635
    Journal articles | 2011
    Al Nadaf S; Deakin JE; Gilbert C; Robinson TJ; Graves JA; Waters PD; Waters P, 2011, 'A cross-species comparison of escape from X inactivation in Eutheria: implications for evolution of X chromosome inactivation.', Chromosoma, 121, pp. 71 - 78, http://dx.doi.org/10.1007/s00412-011-0343-8
    Journal articles | 2011
    Renfree MB; Papenfuss AT; Deakin JE; Lindsay J; Heider T; Belov K; Rens W; Waters PD; Pharo EA; Shaw G; Wong ESW; Lefèvre CM; Nicholas KR; Kuroki Y; Wakefield MJ; Zenger KR; Wang C; Ferguson-Smith M; Nicholas FW; Hickford D; Yu H; Short KR; Siddle HV; Frankenberg SR; Chew KY; Menzies BR; Stringer JM; Suzuki S; Hore TA; Delbridge ML; Mohammadi A; Schneider NY; Hu Y; O'Hara W; Al Nadaf S; Wu C; Feng ZP; Cocks BG; Wang J; Flicek P; Searle SMJ; Fairley S; Beal K; Herrero J; Carone DM; Suzuki Y; Sugano S; Toyoda A; Sakaki Y; Kondo S; Nishida Y; Tatsumoto S; Mandiou I; Hsu A; McColl KA; Lansdell B; Weinstock G; Kuczek E; McGrath A; Wilson P; Men A; Hazar-Rethinam M; Hall A; Davis J; Wood D; Williams S; Sundaravadanam Y; Muzny DM; Jhangiani SN; Lewis LR; Morgan MB; Okwuonu GO; Ruiz SJ; Santibanez J; Nazareth L; Cree A; Fowler G; Kovar CL; Dinh HH; Joshi V; Jing C; Lara F; Thornton R; Chen L; Deng J; Liu Y; Shen JY; Song XZ; Edson J; Troon C; Thomas D; Stephens A; Yapa L; Levchenko T; Gibbs RA; Cooper DW; Speed TP; Fujiyama A; M Graves JA; O'Neill RJ, 2011, 'Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development', Genome Biology, 12, pp. 414, http://dx.doi.org/10.1186/gb-2011-12-8-r81
    Journal articles | 2011
    Royds JA; Al Nadaf S; Wiles AK; Chen YJ; Ahn A; Shaw A; Bowie S; Lam F; Baguley BC; Braithwaite AW; MacFarlane MR; Hung NA; Slatter TL, 2011, 'The cdkn2a g500 allele is more frequent in gbm patients with no defined telomere maintenance mechanism tumors and is associated with poorer survival', Plos One, 6, pp. e26737, http://dx.doi.org/10.1371/journal.pone.0026737
    Journal articles | 2010
    Al Nadaf S; Waters PD; Koina E; Deakin JE; Jordan KS; Graves JAM; Waters P, 2010, 'Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic', Genome Biology, 11, pp. r122, http://dx.doi.org/10.1186/gb-2010-11-12-r122
  • Working Papers | 2021
    Capraro A; Wong S; Adhikari A; Allan K; Patel H; Zhong L; Raftery M; Jaffe A; Yeang M; Aggarwal A; Wu L; Pandzic E; Whan R; Turville S; Vittorio O; Bull R; Kaakoush N; Rawlinson W; Tedla N; Vafaee F; Waters S, 2021, Ageing impairs the airway epithelium defence response to SARS-CoV-2, http://dx.doi.org10.1101/2021.04.05.437453
  • Preprints | 2026
    Sabino LR; Kaiko GE; Dorahy D; Goodsall TT; Jaffe A; Schultz A; Waters S; Cook D; Kok H; Tong K; Totterdell J; McGree J; Snelling T; Wark PAB, 2026, Organoid Guided N-of-1 (ORIGIN-1) Clinical Trial: A phase 4 study to investigate if people with cystic fibrosis with rare non-F508del CFTR mutations with an in-vitro response to Elexacaftor/ Tezacaftor/ Ivacaftor have a clinically meaningful response to Elexacaftor/ Tezacaftor/ Ivacaftor versus placebo., http://dx.doi.org/10.21203/rs.3.rs-7787221/v1
    Preprints | 2025
    Aggarwal A; Ognenovska S; Ison T; Fichter C; Milogiannakis V; Afzal M; Stella AO; Waters S; Esneau C; Bartlett N; Pöhlmann S; Hoffmann M; Burrell L; Patel S; Ellis S; Wehrhahn M; Martinez E; Ginn A; Churchill M; Angelovich T; Rawlinson W; Yeang M; Kok J; Sintchenkov V; Parry R; Sng J; Neely G; Moreno C; Loo L; Kelleher A; Brilot F; Khromykh A; Turville S, 2025, Replication of SARS-CoV-2 Omicron lineages is defined by TMPRSS2 use in environments where ACE2 is complexed with solute carriers SLC6A19 and SLC6A20, http://dx.doi.org/10.1101/2025.07.07.663433
    Preprints | 2025
    Allan KM; Zhang S; Wong SL; Capraro A; McCarron A; Skinner D; Kardia E; Zheng Y; Zhong L; Ng C-A; Bell JL; Farrow N; Umashankar B; Banks C; Herbert C; Kilian KA; Pandzic E; Vittorio O; Vandenberg JI; Lock JG; Jaffe A; Donnelley M; Parsons D; Woodworth BA; Cho D-Y; Waters SA, 2025, Gene-Corrected Basal Cells Restore CFTR In Vitro; Transplants Regenerate Epithelium in a Preclinical Sinus Model., http://dx.doi.org/10.1101/2025.07.21.666023
    Preprints | 2025
    Fawcett L; Chew Z; Schneider-Futschik E; Allan K; Patel H; Jaffe A; Waters S, 2025, INTEGRATING GENOMIC AND FUNCTIONAL TESTING TO IMPROVE CFTR MODULATOR RESPONSE PREDICTION IN CHILDREN WITH CYSTIC FIBROSIS, http://dx.doi.org/10.1101/2025.07.09.25331152
    Other | 2025
    Frohlich M; Prentice B; Owens L; Waters S; Morgan L, 2025, Beyond the present: current and future perspectives on the role of infections in pediatric PCD, http://dx.doi.org/10.3389/fped.2025.1564156
    Conference Papers | 2025
    Nazari H; Cho A-N; Waters S; Cao X; Kardia E; Cole L; Thiery JP; Warkiani ME, 2025, 'Decoding sEV-Mediated Metastasis in Organoid-on-a-Chip Models: Advancing from Static to Dynamic Imaging', in Decoding sEV-Mediated Metastasis in Organoid-on-a-Chip Models: Advancing from Static to Dynamic Imaging, ScienceOpen, presented at 13th Asia Pacific Microscopy Congress 2025, http://dx.doi.org/10.14293/apmc13-2025-0188
    Conference Papers | 2025
    Pandzic E; Allan KM; Whan RM; Waters SA, 2025, 'Image correlation spectroscopy approaches for the quantification of molecular and organellar dynamics in situ', in Image correlation spectroscopy approaches for the quantification of molecular and organellar dynamics in situ, ScienceOpen, presented at 13th Asia Pacific Microscopy Congress 2025, http://dx.doi.org/10.14293/apmc13-2025-0260
    Preprints | 2025
    Poudyal P; Sy B; Mediati DG; Payne M; Nandel V; Norris D; McAteer S; Ullah A; Li S; Menz L; Waters SA; Dallman TJ; Baker M; Lan R; Gally D; Tree J, 2025, Phage-encoded sRNA counteracts xenogenic silencing in pathogenic E. coli, http://dx.doi.org/10.1101/2025.11.27.690950
    Preprints | 2025
    Umashankar B; Capraro A; Vijayan A; Wong S; Nielsen B; Zhong L; Raftery M; Allan K; Ooi C; Sivam S; Visser S; Prentice B; Fawcett L; Kovacevic Z; Eliasson L; Faurholt-Jepsen D; Jaffe A; Shaw JAM; Vafaee F; Waters S, 2025, Serum Exosomal Multi-Omic Signatures Stratify Glucose Tolerance in Cystic Fibrosis and Reveal Partial Therapeutic Reprogramming by CFTR Modulators, http://dx.doi.org/10.1101/2025.07.07.25331056
    Conference Papers | 2024
    Frohlich M; Ebrahimi N; Panzic E; Kardia E; Fernando B; Allen K; Owens L; Jaffe A; Morgan L; Waters S, 2024, 'Establishing in vitro models of PCD airways: A personalised medicine pipeline', in RESPIROLOGY, WILEY, pp. 136 - 137
    Conference Papers | 2024
    Frohlich M; Hillenbrand C; Prentice B; Fawcett L; Purcell M; Burke S; Grimm R; Andreas V; Vogel-Claussen J; Waters S; Owens L; Morgan L; Jaffe A, 2024, 'Assessment of outcomes using phase-resolved functional lung (PREFUL) MRI in a child with primary ciliary dyskinesia', in RESPIROLOGY, WILEY, pp. 228 - 229
    Preprints | 2024
    Gödde N; O’Brien C; Vincan E; Vashi A; Olliff S; Tran B; Waters S; Goldie S; van Vuren PJ; Riddell S; Bruce M; Agarwal V; Athan E; Blasdell K; Chahal S; Creek D; Faheem ; Jain H; Kirkpatrick C; Kumar A; MacRaild C; Muzaffar-Ur-Rehman M; Sankaranarayanan M; Shah R; Styles I; Tachedjian M; Trevaskis N; Singanallur N; McAuley A; Vasan S, 2024, Use of Stem Cell-Derived Cardiomyocyte and Nasal Epithelium Models to Establish a Multi-Tissue Model Platform to Validate Repurposed Drugs Against SARS-CoV-2 Infection, http://dx.doi.org/10.1101/2024.05.22.595397
    Preprints | 2023
    Chang JJ-Y; Grimley S; Tran BM; Deliyannis G; Tumpach C; Steinig E; Wong SL; Waters SA; Stinear TP; Pitt ME; Purcell D; Vincan E; Coin LJM, 2023, Uncovering strain- and age-dependent differences in innate immune response to SARS-CoV-2 infection in nasal epithelia using 10X single-cell sequencing, http://dx.doi.org/10.1101/2023.03.04.531075
    Conference Papers | 2023
    Fawcett L; Jaffe A; Waters S, 2023, 'Paediatric in vitro airway cell models to predict CFTR modulator patient outcomes', in RESPIROLOGY, WILEY, pp. 44 - 44
    Conference Papers | 2023
    Fawcett LK; Jaffe A; Waters SA, 2023, 'WS14.02 Cystic fibrosis personalised medicine; paediatric in vitro airway cell models to predict CFTR modulator patient outcomes', in Journal of Cystic Fibrosis, Elsevier BV, pp. S28 - S28, http://dx.doi.org/10.1016/s1569-1993(23)00266-7
    Preprints | 2023
    Lister N; Milton A; Patel H; Waters S; Hanrahan B; McIntyre K; Livernois A; Wee LK; Ringel A; Mundlos S; Robson M; Shearwin-Whyatt L; Grützner F; Marshall Graves J; Ruiz-Herrera A; Waters P, 2023, Incomplete transcriptional dosage compensation of vertebrate sex chromosomes is balanced by post-transcriptional compensation, http://dx.doi.org/10.1101/2023.02.23.529605
    Preprints | 2023
    McIntyre K; Waters S; Zhong L; Hart-Smith G; Raftery M; Graves JM; Waters P, 2023, Functional coherence of theXistandRSXprotein interactomes: X chromosome inactivation in marsupials, http://dx.doi.org/10.1101/2023.10.08.560959
    Preprints | 2022
    Poursani EM; Mercatelli D; Raninga P; Bell JL; Saletta F; Kohane FV; Zheng Y; Rouaen J; Jue TR; Michniewicz FT; Kasiou E; Tsoli M; Cirillo G; Waters S; Shai-Hee T; Valli E; Brettle M; Whan R; Vahadat L; Ziegler D; Lock JG; Giorgi FM; Khanna KK; Vittorio O, 2022, Copper chelation inhibits TGF-βpathways and suppresses epithelial-mesenchymal transition in cancer, http://dx.doi.org/10.1101/2022.10.03.510707
    Preprints | 2022
    Westhaus A; Cabanes-Creus M; Dilworth KL; Zhu E; Gómez DS; Navarro RG; Amaya AK; Scott S; Kwiatek M; McCorkindale AL; Hayman TE; Frahm S; Perocheau DP; Tran BM; Vincan E; Wong SL; Waters SA; Wilson LOW; Baruteau J; Diecke S; González-Aseguinolaza G; Santilli G; Thrasher AJ; Alexander IE; Lisowski L, 2022, Assessment of pre-clinical liver models based on their ability to predict the liver-tropism of AAV vectors, http://dx.doi.org/10.1101/2022.09.28.510021
    Preprints | 2021
    Azad AKM; Fatima S; Capraro A; Waters SA; Vafaee F, 2021, An Integrative Resource for Network-Based Investigation of COVID-19 Combinatorial Drug Repositioning and Mechanism of Action, http://dx.doi.org/10.26434/chemrxiv-2021-tk6rt-v2
    Preprints | 2021
    Azad AKM; Fatima S; Capraro A; Waters SA; Vafaee F, 2021, An Integrative Resource for Network-Based Investigation of COVID-19 Combinatorial Drug Repositioning and Mechanism of Action, http://dx.doi.org/10.33774/chemrxiv-2021-tk6rt-v2
    Conference Abstracts | 2021
    Waters S, 2021, 'Molecular Dynamics to Explain the Pathogenesis of Gating Class Cystic Fibrosis Mutations', in Molecular Dynamics to Explain the Pathogenesis of Gating Class Cystic Fibrosis Mutations, Elsevier, Boston MA (virtual), Vol. 120, pp. 247a, presented at Biophysical Society Meeting 2021, Boston MA (virtual), 22 February 2021 - 26 February 2021, http://dx.doi.org/10.1016/j.bpj.2020.11.1613
    Preprints | 2021
    Wong S; Awatade N; Astore M; Allan K; Carnell M; Slapetova I; Chen P-C; Capraro A; Fawcett L; Whan R; Griffith R; Ooi C; Kuyucak S; Jaffe A; Waters S, 2021, In silicoand functional characterisation of an ultra-rareCFTRmutation identifies novel lasso motif interactions regulating channel gating, http://dx.doi.org/10.1101/2021.12.12.472297
    Preprints | 2021
    Wong S; Awatade N; Astore M; Allan K; Carnell M; Slapetova I; Chen P-C; Setiadi J; Pandzic E; Fawcett L; Widger J; Whan R; Griffith R; Ooi C; Kuyucak S; Jaffe A; Waters S, 2021, Molecular dynamics and theratyping in airway and gut organoids reveal R352Q-CFTR conductance defect, http://dx.doi.org/10.1101/2021.08.11.456003
    Conference Papers | 2020
    Allan K; Awatade N; Wong S; Jaffe A; Waters S, 2020, 'COMBINATION THERAPY ORKAMBI® (VX‐770/VX‐809) IMPROVES FUNCTION FOR A RARE CFTR MUTATION R117H IN PATIENT‐DERIVED AIRWAY CELL MODELS', in Respirology, Wiley, Melbourne - cancelled due to COVID., presented at TSANZ20_The Thoracic Society of Australia and New Zealand (ANZSRS/TSANZ) Annual Scientific Meeting for Leaders in Lung Health, Melbourne - cancelled due to COVID., http://dx.doi.org/10.1111/resp.13777
    Conference Papers | 2020
    Allan K; Awatade N; Wong S; Turgutoglu N; Jaffe A; Waters S, 2020, 'COMBINATION THERAPY ORKAMBI (R) (VX-770/VX-809) IMPROVES FUNCTION FOR A RARE CFTR MUTATION R117H IN PATIENT-DERIVED AIRWAY CELL MODELS', in RESPIROLOGY, WILEY, pp. 36 - 36, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000538684200067&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Preprints | 2020
    Awatade N; Wong S; Pandzic E; Slapetova I; Capraro A; Zhong L; Turgutoglu N; Fawcett L; Whan R; Jaffe A; Waters S, 2020, Significant functional differences despite morphological and molecular similarity in fully differentiated matched Conditionally Reprogrammed (CRC) and Feeder free dual SMAD inhibited expanded human nasal epithelial cells, http://dx.doi.org/10.1101/2020.05.29.120006
    Conference Papers | 2020
    Awatade NIO; Wong S; Jaffe A; Ooi KC; Waters S, 2020, 'INTESTINAL CURRENT MEASUREMENT AS DIAGNOSTIC AND SURROGATE MARKER OF CFTR FUNCTION IN CF', in Respirology, Wiley, Melbourne, Australia_Cancelled due to COVID-19, presented at INTESTINAL CURRENT MEASUREMENT AS DIAGNOSTIC AND SURROGATE MARKER OF CFTR FUNCTION IN CF, Melbourne, Australia_Cancelled due to COVID-19, http://dx.doi.org/10.1111/resp.13777
    Preprints | 2020
    Azad AKM; Fatima S; Vafaee F, 2020, An Integrative Resource for Network-Based Investigation of COVID-19 Combinatorial Drug Repositioning and Mechanism of Action, http://dx.doi.org/10.26434/chemrxiv.13271096
    Conference Papers | 2020
    Fawcett L; Wakefield C; Widger J; Jaffe A; Waters S, 2020, 'ACCEPTABILITY OF USING PERSONALISED MINI‐ORGAN‐AVATARS TO ACCELERATE DRUG DISCOVERY AND PREDICT DRUG RESPONSE IN CYSTIC FIBROSIS PATIENTS', in TSANZSRS 2020 The Australia & New Zealand Society of Respiratory Science and The Thoracic Society of Australia and New Zealand (ANZSRS/TSANZ) Annual Scientific Meeting for Leaders in Lung Health & Respiratory Science, Melbourne - cancelled due to COVID, presented at TSANZSRS 2020, Melbourne - cancelled due to COVID, http://dx.doi.org/10.1111/resp.13778
    Preprints | 2020
    Hewson C; Capraro A; Wong S; Pandzic E; Fernando BSM; Awatade N; Zhong L; Hart-Smith G; Whan R; Thomas S; Jaffe A; Bridge W; Waters S, 2020, Novel antioxidant therapy with the immediate precursor to glutathione, γ-glutamylcysteine (GGC), ameliorates LPS-induced cellular stress in anin vitrocystic fibrosis model, http://dx.doi.org/10.1101/2020.05.27.119990
    Conference Papers | 2020
    Hewson C; Wong S; Awatade N; Bridge W; Jaffe A; Waters S, 2020, 'A NOVEL COMPOUND FOR CYSTIC FIBROSIS THERAPY, TARGETING THE PROTEOSTASIS NETWORK', in Respirology, Wiley, Melbourne, Australia_Cancelled due to COVID-19, presented at TSANZ20_The Thoracic Society of Australia and New Zealand (ANZSRS/TSANZ) Annual Scientific Meeting for Leaders in Lung Health, Melbourne, Australia_Cancelled due to COVID-19, http://dx.doi.org/10.1111/resp.13777
    Conference Papers | 2020
    Wong S; Awatade N; Fawcett L; Ooi KC; Jaffe A; Waters S, 2020, 'FUNCTIONAL AND PHARMACOLOGICAL CHARACTERIZATION OF RARE R352Q CFTR MUTATION IN PATIENT‐DERIVED DIFFERENTIATED NASAL EPITHELIAL CELLS AND INTESTINAL ORGANOIDS', in Respirology, Wiley, Melbourne, Australia_Cancelled due to COVID-19, presented at TSANZ20_The Thoracic Society of Australia and New Zealand (ANZSRS/TSANZ) Annual Scientific Meeting for Leaders in Lung Health, Melbourne, Australia_Cancelled due to COVID-19, http://dx.doi.org/10.1111/resp.13777
    Conference Papers | 2020
    Wong S; Awatade N; Jaffe A; Waters S, 2020, 'ESTABLISHING PATIENT‐DERIVED NASAL SPHEROIDS AS A NON‐INVASIVE PERSONALISED MODEL FOR ASSESSING CFTR MODULATORS EFFECTIVENESS IN PATIENTS WITH CF', in Respirology, Wiley, Melbourne, Australia_Cancelled due to COVID-19, presented at TSANZ20_The Thoracic Society of Australia and New Zealand (ANZSRS/TSANZ) Annual Scientific Meeting for Leaders in Lung Health, Melbourne, Australia_Cancelled due to COVID-19, http://dx.doi.org/10.1111/resp.13778
    Conference Papers | 2019
    Coffey MJ; Zhong L; Jaffe A; Ooi CY; Waters S, 2019, 'THE HUMAN INTESTINAL PROTEOME IN CHILDREN WITH CYSTIC FIBROSIS', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, pp. S1153 - S1153, presented at Digestive Disease Week (DDW), CA, San Diego, 18 May 2019 - 21 May 2019, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000467106004413&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2019
    Coffey MJ; Zhong L; Jaffe A; Ooi CY; Waters S, 2019, 'THE INTESTINAL PROTEOME IN CHILDREN WITH CYSTIC FIBROSIS DIFFERS FROM HEALTHY CONTROLS', in PEDIATRIC PULMONOLOGY, WILEY, pp. S265 - S265, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000484544000385&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2019
    Coffey MJ; Zhong L; Jaffe A; Ooi CY; Waters S, 2019, 'Tu1872 – The Human Intestinal Proteome in Children with Cystic Fibrosis', in Gastroenterology, Elsevier BV, pp. S - 1153, http://dx.doi.org/10.1016/s0016-5085(19)39855-5
    Conference Papers | 2019
    Fawcett L; Turgutoglu N; Awatade N; Wong S; Widger J; Jaffe A; Waters S, 2019, 'COMPARISON OF TWO DIFFERENT CYTOLOGY BRUSHES FOR COLLECTION OF NASAL MUCOSAL CELLS', in RESPIROLOGY, WILEY, pp. 115 - 115, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000461458900217&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2019
    Hng Y; Waters S; Chen Y; Thomas P; Herbert C, 2019, 'EXOSOME-RELATED MEDIATORS IN SERUM AND EXHALED BREATH CONDENSATE IN SARCOIDOSIS', in RESPIROLOGY, WILEY, pp. 116 - 116, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000461458900219&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2019
    McKay IR; Coffey MJ; Doumit M; Bramley L; Sharp M; Kasparian N; Chuang S; Stelzer-Braid S; Waters S; Thomas T; Jaffe A; Katz TE; Ooi CY, 2019, 'A GUT FEELING: CORRELATING DIETARY INTAKE WITH THE GASTROINTESTINAL AND RESPIRATORY MICROBIOTA IN CYSTIC FIBROSIS', in PEDIATRIC PULMONOLOGY, WILEY, pp. S261 - S262, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000484544000375&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Preprints | 2019
    Sprague D; Waters SA; Kirk JM; Wang JR; Samollow PB; Waters PD; Calabrese JM, 2019, Non-linear sequence similarity between the Xist and Rsx long noncoding RNAs suggests shared functions of tandem repeat domains, http://dx.doi.org/10.1101/630475
    Conference Papers | 2019
    Waters S; Awatade N; Wong S; Hewson C; Fawcett L; Ooi K; Widger J; Jaffe A, 2019, 'TRANSFORMATIVE THERAPIES FOR ULTRA-RARE CFTR MUTATIONS IN PRIMARY PRE-CLINICAL MODELS', in RESPIROLOGY, WILEY, pp. 141 - 141, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000461458900268&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2019
    Waters S; Villamizar O; Jaffe A; Morris K, 2019, 'Targeted Activation of Cystic Fibrosis Transmembrane Conductance Regulator', in Targeted Activation of Cystic Fibrosis Transmembrane Conductance Regulator, WILEY, pp. S183 - S184, presented at 33rd Annual North American Cystic Fibrosis Conference, http://dx.doi.org/10.26190/unsworks/27426
    Conference Papers | 2018
    Coffey MJ; Zhong L; Jaffe A; Ooi CY; Waters S, 2018, 'The human intestinal proteome in children with cystic fibrosis', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, pp. 144 - 144, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000530647800252&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2018
    Prentice B; Hameed S; Verge C; Ooi C; Strachan R; Waters S; Widger J, 2018, 'HYPERGLYCAEMIA IN YOUNG CHILDREN WITH CYSTIC FIBROSIS CORRELATES WITH INFECTION AND NEUTROPHIL BURDEN ON BRONCHOALVEOLAR LAVAGE', in RESPIROLOGY, WILEY, pp. 34 - 34

Young Tall Poppy Science Award

Australian Institute of Policy and Science |NSW Young Tall Poppy Science Award

2022

Best EMCR Poster Award

Australian Academy of Science | AU-China Precision Medicine Symposium

2019

EMCR Travel Award

Australian Academy of Science | AU-China Precision Medicine Symposium

2019

Travel Award

Australian Academy of Science | Science at the Shine Dome Early-and Mid-Career Researchers Program

2018

Finalist

Annual Quality and Innovation Awards | The Sydney Children’s Hospital Network

2018

Travel Award

SIDRA Functional Genomics Towards Precision Medicine Symposium. Doha Qatar

2017

Travel Award

Vice-Chancellor's HDR | Australian National University (ANU)

2012

Best PhD Candidate Talk Award

Genetics Society of Australasia Conference 2010

2010

Travel Award

University of Otago, New Zealand

2008

Best Poster Presentation Award

Molecular Basis of Cancer and Development Meeting 2007

2007

My research program develops human stem cell and organoid systems to understand disease mechanisms, predict therapeutic response and advance regenerative treatments for chronic airway disease.

A central focus of my work is the development of patient-derived epithelial organoid models that enable direct investigation of disease biology in human tissue. My laboratory builds and studies organoid systems derived from airway, gut, liver and other epithelial tissues to investigate the mechanisms underlying cystic fibrosis, bronchiectasis and primary ciliary dyskinesia. These models allow functional assessment of epithelial biology and provide powerful platforms for studying disease pathways and therapeutic response.

My group integrates stem cell biology, genome engineering, advanced imaging and multi-omics approaches to develop precision medicine platforms capable of predicting individual treatment responses. These systems are used to evaluate emerging therapeutics, identify biomarkers of disease progression and support personalised treatment strategies for patients with chronic respiratory disease.

The laboratory maintains one of the largest collections of patient-derived airway organoid models in Australia, representing a wide spectrum of cystic fibrosis mutations and airway disease phenotypes. This biobank enables translational studies that link patient biology with therapeutic response and supports collaborative research with clinicians and international partners.

In parallel, my research aims to translate stem cell technologies into regenerative therapies for airway disease. My group is developing epithelial transplantation strategies and biomaterial-supported epithelial repair approaches designed to restore airway function in patients with severe respiratory disease.

Beyond laboratory research, I contribute to national capability in human-relevant biomedical research systems. I hold leadership roles in initiatives including the Non-Animal Technologies Network (NAT-Net) and the NSW Organoid Innovation Centre, which aim to accelerate development and adoption of organoid technologies and other human-based experimental models across Australia.

Through these activities, my research advances organoid-based disease modelling, regenerative medicine and precision therapeutic strategies for respiratory disease.

Professional Roles and Leadership

Executive Committee Member, Non-Animal Technologies Network

Research Pillar Co-Chair, Non-Animal Technologies Network

Research Committee Member, Thoracic Society of Australia and New Zealand (since 2020)

Research Committee Member, European Cystic Fibrosis Society

Executive Committee Member, Early Career Academic Network (ECAN), University of New South Wales (since 2020)

Co-Chair, Faculty of Medicine & Health Early Career Academic Network, University of New South Wales (since 2020)

Research and Commercialisation Committee Member, Cure4CF Foundation Australia


Professional Memberships

Member, Australian Centre for NanoMedicine

Member, Australian Living Organoid Alliance

Member, Thoracic Society of Australia and New Zealand

Member, European Cystic Fibrosis Society

Member, Australian Society for Medical Research

Member, Genetics Society of Australasia

Member, Women in Research Network


Community Engagement

I work closely with patient and advocacy organisations including Cure4CF Foundation Australia to support research translation, community engagement and initiatives that connect patient communities with advances in cystic fibrosis and respiratory disease research.

My Research Supervision

PhD student (July 2016- current)

Hons and Masters students