Mr Leibo Liu

Mr Leibo Liu

Research Fellow
Medicine & Health
Centre for Big Data Research in Health

I obtained my PhD degree at CBDRH UNSW in Australia. I work as Senior Data Scientist at the Centre for Big Data Research in Health (CBDRH) at University of New South Wales Sydney, and Data Scientist at the George Institute for Global Health (TGI).

The focus of his research is on the utilization of natural language processing and deep learning techniques to extract information from unstructured health data, including clinical notes. His primary research areas involve the de-identification and clinical coding of free-text data found in electronic medical records (EMRs), and predictive modelling based on brain imaging using convolutional neural networks and transformer-based architectures. He has proposed an end-to-end deep learning-based named entity recognition framework, which effectively removes personally identifiable information (PII) from health free-text data. This framework has been utilized to de-identify clinical notes for the Cardiac Analytics and Innovation (CardiacAI) project. Additionally, he has explored Transformer-based models for clinical coding tasks. He is currently engaged in the Next-generation Clinical Registry project at CBDRH and is leading the machine learning model development for the Outcome PredicTion in IntraCerebral Hemorrhage Study (OPTICS) at TGI.

With his strong machine learning skills, solid software engineering technology background, and expertise in big data analysis and data management, he possesses a unique and valuable combination of knowledge and skills.

Location
Level 2, AGSM Building (G27)
  • Book Chapters | 2024
    Bi B; Liu L; Perez-Concha O, 2024, 'Adapting Large Language Models for Automated Summarisation of Electronic Medical Records in Clinical Coding', in , pp. 24 - 29, http://dx.doi.org/10.3233/SHTI240886
  • Journal articles | 2023
    Chen C; Ouyang M; Ong S; Zhang L; Zhang G; Delcourt C; Mair G; Liu L; Billot L; Li Q; Chen X; Parsons M; Broderick JP; Demchuk AM; Bath PM; Donnan GA; Levi C; Chalmers J; Lindley RI; Martins SO; Pontes-Neto OM; Venturelli PM; Olavarría V; Lavados P; Robinson TG; Wardlaw JM; Li G; Wang X; Song L; Anderson CS; Munoz Venturelli P, 2023, 'Effects of intensive blood pressure lowering on cerebral ischaemia in thrombolysed patients: insights from the ENCHANTED trial', eClinicalMedicine, 57, pp. 101849, http://dx.doi.org/10.1016/j.eclinm.2023.101849
    Journal articles | 2023
    Liu L; Perez-Concha O; Nguyen A; Bennett V; Blake V; Gallego B; Jorm L, 2023, 'Web-Based Application Based on Human-in-the-Loop Deep Learning for Deidentifying Free-Text Data in Electronic Medical Records: Development and Usability Study.', Interact J Med Res, 12, pp. e46322, http://dx.doi.org/10.2196/46322
    Journal articles | 2023
    Liu L; Perez-Concha O; Nguyen A; Bennett V; Jorm L, 2023, 'Automated ICD coding using extreme multi-label long text transformer-based models', Artificial Intelligence in Medicine, 144, http://dx.doi.org/10.1016/j.artmed.2023.102662
    Journal articles | 2023
    Ma L; Hu X; Song L; Chen X; Ouyang M; Billot L; Li Q; Malavera A; Li X; Muñoz-Venturelli P; de Silva A; Thang NH; Wahab KW; Pandian JD; Wasay M; Pontes-Neto OM; Abanto C; Arauz A; Shi H; Tang G; Zhu S; She X; Liu L; Sakamoto Y; You S; Han Q; Crutzen B; Cheung E; Li Y; Wang X; Chen C; Liu F; Zhao Y; Li H; Liu Y; Jiang Y; Chen L; Wu B; Liu M; Xu J; You C; Anderson CS; Robinson T; Miranda JJ; Parry-Jones A; Sprigg N; Durrans S; Harris C; Bamford A; Smith O; Herbert R; Chen C; Whiteley W; Hu R; Mysore J; Zhang Y; Jan S; Liu H; Sun L; Chu H; Anjum A; Gonzalez Mc Cawley F; Del Rio A; Rimoli B; Cerantola R; Jeevarajah T; Kannangara M; Joseph A; Nanayakkara C; Zhang C; Yang Z; Li B; Meng Z; Ning Y; Dong L; Armenis M; Lim J; Monaghan H; Luo R; Cheng G; Dong Y; Liu Z; Wang S; Zhang Y; Cheng J; Shi H; Li W; Mou L; Yi P; Chen X; Weerawardena S; Ellawala P; Ranasinghe E; Rodrigo C; Adeniyi S; Khanna M; González F; Urrutia Goldsack F, 2023, 'The third Intensive Care Bundle with Blood Pressure Reduction in Acute Cerebral Haemorrhage Trial (INTERACT3): an international, stepped wedge cluster randomised controlled trial', The Lancet, 402, pp. 27 - 40, http://dx.doi.org/10.1016/S0140-6736(23)00806-1
    Journal articles | 2022
    Liu L; Perez-Concha O; Nguyen A; Bennett V; Jorm L, 2022, 'De-identifying Australian hospital discharge summaries: An end-to-end framework using ensemble of deep learning models', Journal of Biomedical Informatics, 135, http://dx.doi.org/10.1016/j.jbi.2022.104215
    Journal articles | 2022
    Liu L; Perez-Concha O; Nguyen A; Bennett V; Jorm L, 2022, 'Hierarchical label-wise attention transformer model for explainable ICD coding', Journal of Biomedical Informatics, 133, http://dx.doi.org/10.1016/j.jbi.2022.104161
    Journal articles | 2021
    Liu L; Perez-Concha O; Nguyen A; Bennett V; Jorm L, 2021, 'De-identifying Australian Hospital Discharge Summaries: An End-to-End Framework using Ensemble of Deep Learning Models', Journal of Biomedical Informatics, 135, pp. 104215, http://dx.doi.org/10.1016/j.jbi.2022.104215
    Journal articles | 2019
    Anderson CS; Huang Y; Lindley RI; Chen X; Arima H; Chen G; Li Q; Billot L; Delcourt C; Bath PM; Broderick JP; Demchuk AM; Donnan GA; Durham AC; Lavados PM; Martins SO; Olavarria VV; Levi C; Parsons MW; Pontes-Neto OM; Ricci S; Sato S; Sharma VK; Silva F; Song L; Thang NH; Wardlaw JM; Wang JG; Wang X; Woodward M; Chalmers J; Robinson TG; Kim JS; Stapf C; Simes RJ; Hankey GJ; Sandercock P; Bousser MG; Wong KSL; Scaria A; Hirakawa Y; Moullaali TJ; Carcel C; Gordon P; Fuentes-Patarroyo SX; Benito D; Chen R; Cao Y; Kunchok A; Winters S; Coutts S; Yoshimura S; You S; Yang J; Wu G; Zhang S; Manning L; Mistri A; Haunton V; Minhas J; Malavera A; Lim J; Liu L; Kumar NN; Tay N; Jenson K; Richtering S; Tucker S; Knight E; Ivanova E; Thembani E; Odgers E; Sanders E; Small S; Vaghasiya R; Armenis M; Donnelly P; Baig MA; Blacklock N; Naidu B; Monaghan H; Smith P; Glass P; Bai X; Li Q; Zhu P; Kong L; He R; Zhao H; Lv J; Jia H; Xi Z; Cong Y; Cui B; Deng H; Guo Y; He L, 2019, 'Intensive blood pressure reduction with intravenous thrombolysis therapy for acute ischaemic stroke (ENCHANTED): an international, randomised, open-label, blinded-endpoint, phase 3 trial', The Lancet, 393, pp. 877 - 888, http://dx.doi.org/10.1016/S0140-6736(19)30038-8
  • Preprints | 2023
    Chen C; Ouyang M; Ong S; Zhang L; Zhang G; Delcourt C; Mair G; Liu L; Billot L; Li Q; Chen X; Parsons M; Broderick J; Demchuk A; Bath P; Donnan G; Levi C; Chalmers J; Lindley R; Martins S; Pontes-Neto O; Venturelli PM; Olavarría V; Lavados P; Robinson T; Wardlaw J; Li G; Wang X; Song L; Anderson C; Investigators ENCHANTED, 2023, Effects of Intensive Blood Pressure Lowering on Cerebral Ischaemia in Thrombolysed Patients: Insights from the Enchanted Trial, http://dx.doi.org/10.2139/ssrn.4314023
    Preprints | 2023
    Liu L; Perez-Concha O; Nguyen A; Bennett V; Blake V; Gallego B; Jorm L, 2023, Web-Based Application Based on Human-in-the-Loop Deep Learning for Deidentifying Free-Text Data in Electronic Medical Records: Development and Usability Study (Preprint), http://dx.doi.org/10.2196/preprints.46322
    Preprints | 2023
    Ma L; Hu X; Song L; Chen X; Ouyang M; Billot L; Li Q; Malavera A; Li X; Venturelli PM; de Silva A; Thang NH; Wahab K; Pandian J; Wasay M; Pontes-Neto OM; Abanto C; Arauz A; Shi H; Tang G; Zhu S; She X; Liu L; Sakamoto Y; You S; Han Q; Crutzen B; Cheung E; Li Y; Wang X; Chen C; Liu F; Zhao Y; Wu B; Lu M; Li H; Liu Y; Jiang Y; Xu J; You C; Anderson CS, 2023, The Third INTEnsive Care Bundle with Blood Pressure Reduction in Acute Cerebral Haemorrhage Trial (INTERACT3): An International Stepped-Wedge Cluster-Randomised Controlled Trial, http://dx.doi.org/10.2139/ssrn.4374056
    Preprints | 2022
    Liu L; Perez-Concha O; Nguyen A; Bennett V; Jorm L, 2022, Automated ICD Coding using Extreme Multi-label Long Text Transformer-based Models, http://dx.doi.org/10.1016/j.artmed.2023.102662
    Preprints | 2022
    Liu L; Perez-Concha O; Nguyen A; Bennett V; Jorm L, 2022, Hierarchical Label-wise Attention Transformer Model for Explainable ICD Coding, http://dx.doi.org/10.1016/j.jbi.2022.104161
    Preprints | 2020
    Liu L; Perez-Concha O; Nguyen A; Bennett V; Jorm L, 2020, De-identifying Australian Hospital Discharge Summaries: An End-to-End Framework using Ensemble of Deep Learning Models, http://dx.doi.org/10.48550/arxiv.2101.00146
    Conference Papers | 2019
    Yang J; Song L; Li G; Chen X; Chen C; Liu F; Lin Y; Guo Y; Sun L; Arima H; Anderson CS, 2019, 'Intensive Ambulance-delivered Blood Pressure Reduction In Hyper-acute Stroke Trial', in CEREBROVASCULAR DISEASES, KARGER, Manila, Philippines, pp. 111 - 111, presented at APSC 2019, Manila, Philippines, 02 October 2019
    Conference Papers | 2017
    Ge X; Wang X; Anderson C; Chen X; Liu L; Li Q, 2017, 'Impact of Disparities in Acute Stroke Care Between High and Middle Income Countries', in CEREBROVASCULAR DISEASES, KARGER, pp. 2 - 3, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000415238400006&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1