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Dr Yang Song
Scientia Fellow (Level C)

Dr Yang Song

Engineering
Computer Science and Engineering

Dr Yang Song is an ARC Future Fellow, UNSW Scientia Fellow and Senior Lecturer in the School of Computer Science and Engineering. She graduated with a BEng in Computer Engineering from Nanyang Technological University, Singapore, and obtained a PhD degree in Computer Science from the University of Sydney in 2013.

Her research area is in Computer Vision, Biomedical Image Analysis, Machine Learning, Deep Learning, and AI. She has over 150 peer-reviewed publications including papers in TMI, MedIA, TIP, NeuroImage, BMC Bioinformatics, CVPR, ICCV, AAAI, IJCAI, and MICCAI. Her current research mainly focuses on the development of machine learning and deep learning algorithms for computer vision problems such as:

  • Segmentation in radiological images 
  • Cancer analysis in histopathology images
  • Cell segmentation and tracking
  • Point clouds analysis
  • 3D image reconstruction
  • Object detection and recognition
  • Action recognition and video analysis
  • Vision-based autonomous driving
  • Image enhancement and translation

Personal website - http://www.cse.unsw.edu.au/~ysong/ 
E-mail
yang.song1@unsw.edu.au
Location
Room 401E, K17, CSE
  • Book Chapters | 2022
    Chen Y; Zhang F; Zhang C; Xue T; Zekelman LR; He J; Song Y; Makris N; Rathi Y; Golby AJ; Cai W; O’Donnell LJ, 2022, 'White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning', in Lecture Notes in Computer Science, Springer Nature Switzerland, pp. 174 - 184, http://dx.doi.org/10.1007/978-3-031-16431-6_17
    Book Chapters | 2022
    Fan L; Sowmya A; Meijering E; Song Y, 2022, 'Fast FF-to-FFPE Whole Slide Image Translation via Laplacian Pyramid and Contrastive Learning', in Lecture Notes in Computer Science, Springer Nature Switzerland, pp. 409 - 419, http://dx.doi.org/10.1007/978-3-031-16434-7_40
    Book Chapters | 2022
    Wang H; Song Y; Tang Z; Zhang C; Yu J; Liu D; Zhang D; Liu S; Cai W, 2022, 'AI-Enhanced 3D Biomedical Data Analytics for Neuronal Structure Reconstruction', in Humanity Driven AI, Springer International Publishing, pp. 135 - 163, http://dx.doi.org/10.1007/978-3-030-72188-6_7
    Book Chapters | 2022
    Xie K; Yang Y; Pagnucco M; Song Y, 2022, 'Electron Microscope Image Registration Using Laplacian Sharpening Transformer U-Net', in Lecture Notes in Computer Science, Springer Nature Switzerland, pp. 310 - 319, http://dx.doi.org/10.1007/978-3-031-16446-0_30
    Book Chapters | 2021
    Chen Y; Zhang C; Song Y; Makris N; Rathi Y; Cai W; Zhang F; O’Donnell LJ, 2021, 'Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation', in Medical Image Computing and Computer Assisted Intervention – MICCAI 2021, Springer International Publishing, pp. 497 - 507, http://dx.doi.org/10.1007/978-3-030-87234-2_47
    Book Chapters | 2021
    Cong C; Liu S; Di Ieva A; Pagnucco M; Berkovsky S; Song Y, 2021, 'Semi-supervised Adversarial Learning for Stain Normalisation in Histopathology Images', in Medical Image Computing and Computer Assisted Intervention – MICCAI 2021, Springer International Publishing, pp. 581 - 591, http://dx.doi.org/10.1007/978-3-030-87237-3_56
    Book Chapters | 2021
    Guo R; Pagnucco M; Song Y, 2021, 'Learning with Noise: Mask-Guided Attention Model for Weakly Supervised Nuclei Segmentation', in Medical Image Computing and Computer Assisted Intervention – MICCAI 2021, Springer International Publishing, pp. 461 - 470, http://dx.doi.org/10.1007/978-3-030-87196-3_43
    Book Chapters | 2021
    Hu Y; Meijering E; Xia Y; Song Y, 2021, 'Deformable Convolution and Semi-supervised Learning in Point Clouds for Aneurysm Classification and Segmentation', in Neural Information Processing, Springer International Publishing, pp. 283 - 290, http://dx.doi.org/10.1007/978-3-030-92310-5_33
    Book Chapters | 2021
    Wang H; Zhang C; Yu J; Song Y; Liu S; Chrzanowski W; Cai W, 2021, 'Voxel-Wise Cross-Volume Representation Learning for 3D Neuron Reconstruction', in Machine Learning in Medical Imaging, Springer International Publishing, pp. 248 - 257, http://dx.doi.org/10.1007/978-3-030-87589-3_26
    Book Chapters | 2021
    Wang X; Xiang T; Zhang C; Song Y; Liu D; Huang H; Cai W, 2021, 'BiX-NAS: Searching Efficient Bi-directional Architecture for Medical Image Segmentation', in Medical Image Computing and Computer Assisted Intervention – MICCAI 2021, Springer International Publishing, pp. 229 - 238, http://dx.doi.org/10.1007/978-3-030-87193-2_22
    Book Chapters | 2020
    Cai W; Song Y; Kumar A; Kim J; Feng DD, 2020, 'Content-based large-scale medical image retrieval', in Biomedical Information Technology, Elsevier, pp. 321 - 368, http://dx.doi.org/10.1016/b978-0-12-816034-3.00011-0
    Book Chapters | 2020
    Song Y; Cai W, 2020, 'Visual feature representation in microscopy image classification', in Computer Vision for Microscopy Image Analysis, Elsevier, pp. 73 - 100, http://dx.doi.org/10.1016/B978-0-12-814972-0.00004-7
    Book Chapters | 2017
    Song Y; Cai W, 2017, 'Chapter 6 Handling of Feature Space Complexity for Texture Analysis in Medical Images', in Biomedical Texture Analysis, Elsevier, pp. 163 - 191, http://dx.doi.org/10.1016/b978-0-12-812133-7.00006-5
    Book Chapters | 2017
    Song Y; Cai W, 2017, 'Handling of feature space complexity for texture analysis in medical images', in Biomedical Texture Analysis: Fundamentals, Tools and Challenges, pp. 163 - 191, http://dx.doi.org/10.1016/B978-0-12-812133-7.00006-5
    Book Chapters | 2017
    Zhang F; Song Y; Cai W; Depeursinge A; Müller H, 2017, 'Text- and Content-Based Medical Image Retrieval in the VISCERAL Retrieval Benchmark', in Cloud-Based Benchmarking of Medical Image Analysis, Springer International Publishing, pp. 237 - 249, http://dx.doi.org/10.1007/978-3-319-49644-3_14
    Book Chapters | 2014
    Song Y; Cai W; Eberl S; Fulham MJ; Feng DD, 2014, 'FEATURE-CENTRIC LESION DETECTION AND RETRIEVAL IN THORACIC IMAGES', in Computer Vision in Medical Imaging, WORLD SCIENTIFIC, pp. 75 - 94, http://dx.doi.org/10.1142/9789814460941_0005
  • Journal articles | 2022
    Cong C; Liu S; Di Ieva A; Pagnucco M; Berkovsky S; Song Y, 2022, 'Colour adaptive generative networks for stain normalisation of histopathology images', Medical Image Analysis, vol. 82, pp. 102580, http://dx.doi.org/10.1016/j.media.2022.102580
    Journal articles | 2022
    Jiang J; Wang D; Song Y; Sachdev PS; Wen W, 2022, 'Computer-aided extraction of select MRI markers of cerebral small vessel disease: A systematic review', NeuroImage, vol. 261, pp. 119528, http://dx.doi.org/10.1016/j.neuroimage.2022.119528
    Journal articles | 2022
    Liu D; Zhang C; Song Y; Huang H; Wang C; Barnett M; Cai W, 2022, 'Decompose to Adapt: Cross-domain Object Detection via Feature Disentanglement', IEEE Transactions on Multimedia, http://dx.doi.org/10.1109/TMM.2022.3141614
    Journal articles | 2022
    Ma Y; Zhang C; Cabezas M; Song Y; Tang Z; Liu D; Cai W; Barnett M; Wang C, 2022, 'Multiple Sclerosis Lesion Analysis in Brain Magnetic Resonance Images: Techniques and Clinical Applications', IEEE Journal of Biomedical and Health Informatics, vol. 26, pp. 2680 - 2692, http://dx.doi.org/10.1109/JBHI.2022.3151741
    Journal articles | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, 'Data augmentation with improved regularisation and sampling for imbalanced blood cell image classification', Scientific Reports, vol. 12, http://dx.doi.org/10.1038/s41598-022-22882-x
    Journal articles | 2022
    Sandarenu P; Millar EKA; Song Y; Browne L; Beretov J; Lynch J; Graham PH; Jonnagaddala J; Hawkins N; Huang J; Meijering E, 2022, 'Survival prediction in triple negative breast cancer using multiple instance learning of histopathological images', Scientific Reports, vol. 12, pp. 14527, http://dx.doi.org/10.1038/s41598-022-18647-1
    Journal articles | 2022
    Xiang T; Song Y; Zhang C; Liu D; Chen M; Zhang F; Huang H; O'Donnell L; Cai W, 2022, 'DSNet: A Dual-Stream Framework for Weakly-Supervised Gigapixel Pathology Image Analysis', IEEE Transactions on Medical Imaging, vol. 41, pp. 2180 - 2190, http://dx.doi.org/10.1109/TMI.2022.3157983
    Journal articles | 2022
    Xiang T; Zhang C; Wang X; Song Y; Liu D; Huang H; Cai W, 2022, 'Towards bi-directional skip connections in encoder-decoder architectures and beyond', Medical Image Analysis, vol. 78, http://dx.doi.org/10.1016/j.media.2022.102420
    Journal articles | 2021
    Liu D; Zhang D; Song Y; Huang H; Cai W, 2021, 'Panoptic Feature Fusion Net: A Novel Instance Segmentation Paradigm for Biomedical and Biological Images', IEEE Transactions on Image Processing, vol. 30, pp. 2045 - 2059, http://dx.doi.org/10.1109/TIP.2021.3050668
    Journal articles | 2021
    Liu D; Zhang D; Song Y; Zhang F; O'Donnell L; Huang H; Chen M; Cai W, 2021, 'PDAM: A Panoptic-Level Feature Alignment Framework for Unsupervised Domain Adaptive Instance Segmentation in Microscopy Images', IEEE Transactions on Medical Imaging, vol. 40, pp. 154 - 165, http://dx.doi.org/10.1109/TMI.2020.3023466
    Journal articles | 2021
    Rana P; Sowmya A; Meijering E; Song Y, 2021, 'Estimation of three-dimensional chromatin morphology for nuclear classification and characterisation', Scientific Reports, vol. 11, http://dx.doi.org/10.1038/s41598-021-82985-9
    Journal articles | 2021
    Zhu J; Bolsterlee B; Chow BVY; Cai C; Herbert RD; Song Y; Meijering E, 2021, 'Deep learning methods for automatic segmentation of lower leg muscles and bones from MRI scans of children with and without cerebral palsy', NMR in Biomedicine, vol. 34, pp. e4609, http://dx.doi.org/10.1002/nbm.4609
    Journal articles | 2020
    Jia H; Xia Y; Song Y; Zhang D; Huang H; Zhang Y; Cai W, 2020, '3D APA-Net: 3D Adversarial Pyramid Anisotropic Convolutional Network for Prostate Segmentation in MR Images', IEEE Transactions on Medical Imaging, vol. 39, pp. 447 - 457, http://dx.doi.org/10.1109/TMI.2019.2928056
    Journal articles | 2020
    Rana P; Sowmya A; Meijering E; Song Y, 2020, 'Estimation of Three-Dimensional Chromatin Morphology for Nuclear Classification and Characterisation', , http://dx.doi.org/10.1101/2020.07.29.226498
    Journal articles | 2020
    Wu Y; Xia Y; Song Y; Zhang Y; Cai W, 2020, 'NFN＋: A novel network followed network for retinal vessel segmentation', Neural Networks, vol. 126, pp. 153 - 162, http://dx.doi.org/10.1016/j.neunet.2020.02.018
    Journal articles | 2020
    Zheng Y; Meng F; Liu J; Guo B; Song Y; Zhang X; Wang L, 2020, 'Fourier Transform to Group Feature on Generated Coarser Contours for Fast 2D Shape Matching', IEEE Access, vol. 8, pp. 90141 - 90152, http://dx.doi.org/10.1109/ACCESS.2020.2994234
    Journal articles | 2019
    Gao C; He X; Gan D; Chen X; Feng F; Li Y; Chua T; Yao L; Song Y; Jin D, 2019, 'Learning to Recommend with Multiple Cascading Behaviors', IEEE Transactions on Knowledge and Data Engineering, pp. 1 - 1, http://dx.doi.org/10.1109/TKDE.2019.2958808
    Journal articles | 2019
    Khanal D; Zhang F; Song Y; Hau H; Gautam A; Yamaguchi S; Uertz J; Mills S; Kondyurin A; Knowles JC; Georgiou G; Ramzan I; Cai W; Ng KW; Chrzanowski W, 2019, 'Biological impact of nanodiamond particles–label free, high-resolution methods for nanotoxicity assessment', Nanotoxicology, vol. 13, pp. 1210 - 1226, http://dx.doi.org/10.1080/17435390.2019.1650970
    Journal articles | 2019
    Xie Y; Xia Y; Zhang J; Song Y; Feng D; Fulham M; Cai W, 2019, 'Knowledge-based Collaborative Deep Learning for Benign-Malignant Lung Nodule Classification on Chest CT', IEEE Transactions on Medical Imaging, vol. 38, pp. 991 - 1004, http://dx.doi.org/10.1109/TMI.2018.2876510
    Journal articles | 2018
    Jia H; Xia Y; Song Y; Cai W; Fulham M; Feng DD, 2018, 'Atlas registration and ensemble deep convolutional neural network-based prostate segmentation using magnetic resonance imaging', Neurocomputing, vol. 275, pp. 1358 - 1369, http://dx.doi.org/10.1016/j.neucom.2017.09.084
    Journal articles | 2018
    Liu S; Zhang D; Song Y; Peng H; Cai W, 2018, 'Automated 3-D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back Tracking', IEEE Transactions on Medical Imaging, vol. 37, pp. 2441 - 2452, http://dx.doi.org/10.1109/TMI.2018.2833420
    Journal articles | 2018
    Meng F; Shan D; Shi R; Song Y; Guo B; Cai W, 2018, 'Merged region based image retrieval', Journal of Visual Communication and Image Representation, vol. 55, pp. 572 - 585, http://dx.doi.org/10.1016/j.jvcir.2018.07.003
    Journal articles | 2018
    Pan Y; Xia Y; Song Y; Cai W, 2018, 'Locality constrained encoding of frequency and spatial information for image classification', Multimedia Tools and Applications, vol. 77, pp. 24891 - 24907, http://dx.doi.org/10.1007/s11042-018-5712-3
    Journal articles | 2018
    Tareef A; Song Y; Huang H; Feng D; Chen M; Wang Y; Cai W, 2018, 'Multi-Pass Fast Watershed for Accurate Segmentation of Overlapping Cervical Cells', IEEE Transactions on Medical Imaging, vol. 37, pp. 2044 - 2059, http://dx.doi.org/10.1109/TMI.2018.2815013
    Journal articles | 2018
    Zhang D; Liu S; Song Y; Feng D; Peng H; Cai W, 2018, 'Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction', Neuroinformatics, vol. 16, pp. 153 - 166, http://dx.doi.org/10.1007/s12021-017-9353-x
    Journal articles | 2018
    Zhang F; Savadjiev P; Cai W; Song Y; Rathi Y; Tunç B; Parker D; Kapur T; Schultz RT; Makris N; Verma R; O'Donnell LJ, 2018, 'Whole brain white matter connectivity analysis using machine learning: An application to autism', NeuroImage, vol. 172, pp. 826 - 837, http://dx.doi.org/10.1016/j.neuroimage.2017.10.029
    Journal articles | 2018
    Zhang F; Wu W; Ning L; McAnulty G; Waber D; Gagoski B; Sarill K; Hamoda HM; Song Y; Cai W; Rathi Y; O'Donnell LJ, 2018, 'Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis', NeuroImage, vol. 171, pp. 341 - 354, http://dx.doi.org/10.1016/j.neuroimage.2018.01.006
    Journal articles | 2017
    Meng F; Shi R; Shan D; Song Y; He W; Cai W, 2017, 'Multi-sensor image fusion based on regional characteristics', International Journal of Distributed Sensor Networks, vol. 13, http://dx.doi.org/10.1177/1550147717741105
    Journal articles | 2017
    Song Y; Li Q; Huang H; Feng D; Chen M; Cai W, 2017, 'Low Dimensional Representation of Fisher Vectors for Microscopy Image Classification', IEEE Transactions on Medical Imaging, vol. 36, pp. 1636 - 1649, http://dx.doi.org/10.1109/TMI.2017.2687466
    Journal articles | 2017
    Song Y; Li Q; Zhang F; Huang H; Feng D; Wang Y; Chen M; Cai W, 2017, 'Dual discriminative local coding for tissue aging analysis', Medical Image Analysis, vol. 38, pp. 65 - 76, http://dx.doi.org/10.1016/j.media.2016.10.001
    Journal articles | 2017
    Tareef A; Song Y; Cai W; Huang H; Chang H; Wang Y; Fulham M; Feng D; Chen M, 2017, 'Automatic segmentation of overlapping cervical smear cells based on local distinctive features and guided shape deformation', Neurocomputing, vol. 221, pp. 94 - 107, http://dx.doi.org/10.1016/j.neucom.2016.09.070
    Journal articles | 2017
    Tareef A; Song Y; Huang H; Wang Y; Feng D; Chen M; Cai W, 2017, 'Optimizing the cervix cytological examination based on deep learning and dynamic shape modeling', Neurocomputing, vol. 248, pp. 28 - 40, http://dx.doi.org/10.1016/j.neucom.2017.01.093
    Journal articles | 2016
    Song Y; Cai W; Huang H; Feng D; Wang Y; Chen M, 2016, 'Bioimage classification with subcategory discriminant transform of high dimensional visual descriptors', BMC Bioinformatics, vol. 17, http://dx.doi.org/10.1186/s12859-016-1318-9
    Journal articles | 2016
    Song Y; Li Q; Feng D; Zou JJ; Cai W, 2016, 'Texture image classification with discriminative neural networks', Computational Visual Media, vol. 2, pp. 367 - 377, http://dx.doi.org/10.1007/s41095-016-0060-6
    Journal articles | 2016
    Yang MY; Verschuer J; Shi Y; Song Y; Katsifis A; Eberl S; Wong K; Brannan JD; Cai W; Finlay WH; Chan HK, 2016, 'The effect of device resistance and inhalation flow rate on the lung deposition of orally inhaled mannitol dry powder', International Journal of Pharmaceutics, vol. 513, pp. 294 - 301, http://dx.doi.org/10.1016/j.ijpharm.2016.09.047
    Journal articles | 2016
    Zhang F; Song Y; Cai W; Hauptmann AG; Liu S; Pujol S; Kikinis R; Fulham MJ; Feng DD; Chen M, 2016, 'Dictionary pruning with visual word significance for medical image retrieval', Neurocomputing, vol. 177, pp. 75 - 88, http://dx.doi.org/10.1016/j.neucom.2015.11.008
    Journal articles | 2016
    Zhang F; Song Y; Cai W; Liu S; Liu S; Pujol S; Kikinis R; Xia Y; Fulham MJ; Feng DD, 2016, 'Pairwise Latent Semantic Association for Similarity Computation in Medical Imaging', IEEE Transactions on Biomedical Engineering, vol. 63, pp. 1058 - 1069, http://dx.doi.org/10.1109/TBME.2015.2478028
    Journal articles | 2015
    Song Y; Cai W; Huang H; Zhou Y; Feng DD; Wang Y; Fulham MJ; Chen M, 2015, 'Large margin local estimate with applications to medical image classification', IEEE Transactions on Medical Imaging, vol. 34, pp. 1362 - 1377, http://dx.doi.org/10.1109/TMI.2015.2393954
    Journal articles | 2015
    Song Y; Cai W; Huang H; Zhou Y; Wang Y; Feng DD, 2015, 'Locality-constrained Subcluster Representation Ensemble for lung image classification', Medical Image Analysis, vol. 22, pp. 102 - 113, http://dx.doi.org/10.1016/j.media.2015.03.003
    Journal articles | 2014
    Song Y; Cai W; Huang H; Wang X; Zhou Y; Fulham MJ; Feng DD, 2014, 'Lesion detection and characterization with context driven approximation in thoracic FDG PET-CT images of NSCLC studies', IEEE Transactions on Medical Imaging, vol. 33, pp. 408 - 421, http://dx.doi.org/10.1109/TMI.2013.2285931
    Journal articles | 2014
    Song Y; Cail W; Huang H; Zhou Y; Feng DDA; Chen M, 2014, 'Large margin aggregation of local estimates for medical image classification', Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, vol. 17, pp. 196 - 203
    Journal articles | 2014
    Zhang F; Song Y; Cai W; Lee MZ; Zhou Y; Huang H; Shan S; Fulham MJ; Feng DD, 2014, 'Lung nodule classification with multilevel patch-based context analysis', IEEE Transactions on Biomedical Engineering, vol. 61, pp. 1155 - 1166, http://dx.doi.org/10.1109/TBME.2013.2295593
    Journal articles | 2013
    Song Y; Cai W; Huang H; Wang Y; Feng DD; Chen M, 2013, 'Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling', BMC Bioinformatics, vol. 14, http://dx.doi.org/10.1186/1471-2105-14-173
    Journal articles | 2013
    Song Y; Cai W; Zhou Y; Feng DD, 2013, 'Feature-based image patch approximation for lung tissue classification', IEEE Transactions on Medical Imaging, vol. 32, pp. 797 - 808, http://dx.doi.org/10.1109/TMI.2013.2241448
    Journal articles | 2012
    Song Y; Cai W; Kim J; Feng DD, 2012, 'A multistage discriminative model for tumor and lymph node detection in thoracic images', IEEE Transactions on Medical Imaging, vol. 31, pp. 1061 - 1075, http://dx.doi.org/10.1109/TMI.2012.2185057
  • Preprints | 2022
    Chen Y; Zhang C; Xue T; Song Y; Makris N; Rathi Y; Cai W; Zhang F; O'Donnell LJ, 2022, DFC: Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation, http://dx.doi.org/10.48550/arxiv.2205.00627
    Preprints | 2022
    Chen Y; Zhang F; Zhang C; Xue T; Zekelman LR; He J; Song Y; Makris N; Rathi Y; Golby AJ; Cai W; O'Donnell LJ, 2022, White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning, http://dx.doi.org/10.48550/arxiv.2207.02402
    Conference Papers | 2022
    Cong C; Yang Y; Liu S; Pagnucco M; Song Y, 2022, 'Imbalanced Histopathology Image Classification Using Deep Feature Graph Attention Network', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI52829.2022.9761619
    Conference Papers | 2022
    Hu Y; Pan Y; Song Y; Meijering E; Cui Z; Zhao Y; Ding Z; Zhu M; Shen D, 2022, 'Parallel Sinogram and Image Framework With Co-Training Strategy for Metal Artifact Reduction in Tooth Ct Images', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI52829.2022.9761653
    Conference Papers | 2022
    Li P; Yang Y; Pagnucco M; Song Y, 2022, 'CoGNet: Cooperative Graph Neural Networks', in Proceedings of the International Joint Conference on Neural Networks, IEEE, presented at 2022 International Joint Conference on Neural Networks (IJCNN), 18 July 2022 - 23 July 2022, http://dx.doi.org/10.1109/IJCNN55064.2022.9892241
    Conference Papers | 2022
    Luo S; Heng Z; Pagnucco M; Song Y, 2022, 'Two-Stage Topological Refinement Network for Retinal Artery/Vein Classification', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI52829.2022.9761669
    Preprints | 2022
    Mandal A; Priyam S; Chan HH; Gouveia BM; Guitera P; Song Y; Baker MAB; Vafaee F, 2022, Computer-aided diagnosis of reflectance confocal images to differentiate between lentigo maligna (LM) and atypical intraepidermal melanocytic proliferation (AIMP), http://dx.doi.org/10.1101/2022.05.10.491423
    Conference Papers | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, 'Imbalanced Cell-Cycle Classification Using Wgan-Div and Mixup', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI52829.2022.9761488
    Preprints | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, Data augmentation for imbalanced blood cell image classification, http://dx.doi.org/10.1101/2022.08.30.505762
    Preprints | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, Data augmentation for imbalanced blood cell image classification, http://dx.doi.org/10.21203/rs.3.rs-1645828/v1
    Preprints | 2022
    Rana P; Sowmya A; Meijering E; Song Y, 2022, Imbalanced classification for protein subcellular localisation with multilabel oversampling, http://dx.doi.org/10.1101/2022.09.12.507675
    Preprints | 2022
    Xue T; Zhang F; Zhang C; Chen Y; Song Y; Golby AJ; Makris N; Rathi Y; Cai W; O'Donnell LJ, 2022, Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions, http://dx.doi.org/10.48550/arxiv.2207.08975
    Conference Papers | 2022
    Xue T; Zhang F; Zhang C; Chen Y; Song Y; Makris N; Rathi Y; Cai W; O'Donnell LJ, 2022, 'Supwma: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI52829.2022.9761541
    Preprints | 2022
    Xue T; Zhang F; Zhang C; Chen Y; Song Y; Makris N; Rathi Y; Cai W; O'Donnell LJ, 2022, SupWMA: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning, http://dx.doi.org/10.48550/arxiv.2201.12528
    Conference Papers | 2022
    Zheng Y; Gao C; Chang J; Niu Y; Song Y; Jin D; Li Y, 2022, 'Disentangling Long and Short-Term Interests for Recommendation', in Proceedings of the ACM Web Conference 2022, ACM, presented at WWW '22: The ACM Web Conference 2022, http://dx.doi.org/10.1145/3485447.3512098
    Conference Papers | 2022
    Zhu J; Bolsterlee B; Chow BVY; Song Y; Meijering E, 2022, 'Hybrid Attentive Unet for Segmentation of Lower Leg Muscles and Bones From MRI Scans For Musculoskeletal Research', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI52829.2022.9761501
    Conference Papers | 2021
    Bai Y; Wang J; Long Y; Hu B; Song Y; Pagnucco M; Guan Y, 2021, 'Discriminative Latent Semantic Graph for Video Captioning', in MM 2021 - Proceedings of the 29th ACM International Conference on Multimedia, ACM, pp. 3556 - 3564, presented at MM '21: ACM Multimedia Conference, http://dx.doi.org/10.1145/3474085.3475519
    Conference Papers | 2021
    Chang J; Gao C; Zheng Y; Hui Y; Niu Y; Song Y; Jin D; Li Y, 2021, 'Sequential Recommendation with Graph Neural Networks', in Proceedings of the 44th International ACM SIGIR Conference on Research and Development in Information Retrieval, ACM, presented at SIGIR '21: The 44th International ACM SIGIR Conference on Research and Development in Information Retrieval, http://dx.doi.org/10.1145/3404835.3462968
    Conference Papers | 2021
    Chen Y; Song Y; Zhang C; Zhang F; O'Donnell L; Chrzanowski W; Cai W, 2021, 'Celltrack R-CNN: A novel end-to-end deep neural network for cell segmentation and tracking in microscopy images', in Proceedings - International Symposium on Biomedical Imaging, pp. 779 - 782, http://dx.doi.org/10.1109/ISBI48211.2021.9434057
    Preprints | 2021
    Chen Y; Zhang C; Song Y; Makris N; Rathi Y; Cai W; Zhang F; O'Donnell LJ, 2021, Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation, http://dx.doi.org/10.48550/arxiv.2107.04938
    Conference Papers | 2021
    Chu SW; Zhang C; Song Y; Cai W, 2021, 'ITERATIVE SUBNETWORK WITH LINEAR HIERARCHICAL ORDERING FOR HUMAN POSE ESTIMATION', in Proceedings - International Conference on Image Processing, ICIP, pp. 514 - 518, http://dx.doi.org/10.1109/ICIP42928.2021.9506319
    Conference Papers | 2021
    Cong C; Liu S; Ieva AD; Pagnucco M; Berkovsky S; Song Y, 2021, 'Texture enhanced generative adversarial network for stain normalisation in histopathology images', in Proceedings - International Symposium on Biomedical Imaging, IEEE, pp. 1949 - 1952, presented at 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 13 April 2021 - 16 April 2021, http://dx.doi.org/10.1109/ISBI48211.2021.9433860
    Conference Papers | 2021
    Fan L; Sowmya A; Meijering E; Song Y, 2021, 'Learning Visual Features by Colorization for Slide-Consistent Survival Prediction from Whole Slide Images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer International Publishing, pp. 592 - 601, http://dx.doi.org/10.1007/978-3-030-87237-3_57
    Conference Papers | 2021
    Lin H; Pagnucco M; Song Y, 2021, 'Edge guided progressively generative image outpainting', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, pp. 806 - 815, http://dx.doi.org/10.1109/CVPRW53098.2021.00090
    Conference Papers | 2021
    Liu Y; Mohammadi G; Song Y; Johal W, 2021, 'Speech-based Gesture Generation for Robots and Embodied Agents: A ScopingReview', Japan, presented at Human-Agent Interaction, Japan, 09 November 2021
    Conference Papers | 2021
    Pagnucco M; Rajaratnam D; Limarga R; Nayak A; Song Y, 2021, 'Epistemic Reasoning for Machine Ethics with Situation Calculus', in AIES 2021 - Proceedings of the 2021 AAAI/ACM Conference on AI, Ethics, and Society, ACM, pp. 814 - 821, presented at AIES '21: AAAI/ACM Conference on AI, Ethics, and Society, http://dx.doi.org/10.1145/3461702.3462586
    Conference Papers | 2021
    Rana P; Meijering E; Sowmya A; Song Y, 2021, 'Multi-label classification based on subcellular region-guided feature description for protein localisation', in Proceedings - International Symposium on Biomedical Imaging, IEEE, pp. 1929 - 1933, presented at 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 13 April 2021 - 16 April 2021, http://dx.doi.org/10.1109/ISBI48211.2021.9434145
    Conference Papers | 2021
    Wang H; Song Y; Zhang C; Yu J; Liu S; Pengy H; Cai W, 2021, 'Single neuron segmentation using graph-based global reasoning with auxiliary skeleton loss from 3D optical microscope images', in Proceedings - International Symposium on Biomedical Imaging, pp. 934 - 938, http://dx.doi.org/10.1109/ISBI48211.2021.9434071
    Preprints | 2021
    Wang X; Xiang T; Zhang C; Song Y; Liu D; Huang H; Cai W, 2021, BiX-NAS: Searching Efficient Bi-directional Architecture for Medical Image Segmentation, http://dx.doi.org/10.48550/arxiv.2106.14033
    Conference Papers | 2021
    Xiang T; Zhang C; Song Y; Yu J; Cai W, 2021, 'Walk in the Cloud: Learning Curves for Point Clouds Shape Analysis', in Proceedings of the IEEE International Conference on Computer Vision, pp. 895 - 904, http://dx.doi.org/10.1109/ICCV48922.2021.00095
    Conference Papers | 2021
    Yu J; Zhang C; Song Y; Cai W, 2021, 'ICE-GAN: Identity-Aware and Capsule-Enhanced GAN with Graph-Based Reasoning for Micro-Expression Recognition and Synthesis', in Proceedings of the International Joint Conference on Neural Networks, IEEE, presented at 2021 International Joint Conference on Neural Networks (IJCNN), 18 July 2021 - 22 July 2021, http://dx.doi.org/10.1109/IJCNN52387.2021.9533988
    Conference Papers | 2021
    Zhang C; Yu J; Song Y; Cai W, 2021, 'Exploiting Edge-Oriented Reasoning for 3D Point-based Scene Graph Analysis', in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, pp. 9700 - 9710, presented at 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 20 June 2021 - 25 June 2021, http://dx.doi.org/10.1109/CVPR46437.2021.00958
    Conference Papers | 2020
    Cong C; Yang Z; Song Y; Pagnucco M, 2020, 'Towards Enforcing Social Distancing Regulations with Occlusion-Aware Crowd Detection', in 16th IEEE International Conference on Control, Automation, Robotics and Vision, ICARCV 2020, pp. 297 - 302, http://dx.doi.org/10.1109/ICARCV50220.2020.9305507
    Conference Papers | 2020
    Dodballapur V; Calisa R; Song Y; Cai W, 2020, 'Automatic Dropout for Deep Neural Networks', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 185 - 196, http://dx.doi.org/10.1007/978-3-030-63836-8_16
    Conference Papers | 2020
    Dodballapur V; Song Y; Huang H; Chen M; Chrzanowski W; Cai W, 2020, 'Dual-Stage Domain Adaptive Mitosis Detection for Histopathology Images', in 2020 Digital Image Computing: Techniques and Applications, DICTA 2020, http://dx.doi.org/10.1109/DICTA51227.2020.9363411
    Conference Papers | 2020
    Huang R; Song Y; Pagnucco M, 2020, 'An Improved Discriminator for GAN-Based Trajectory Prediction Models', in 2020 Digital Image Computing: Techniques and Applications, DICTA 2020, http://dx.doi.org/10.1109/DICTA51227.2020.9363414
    Conference Papers | 2020
    Limarga R; Pagnucco M; Song Y; Nayak A, 2020, 'Non-monotonic Reasoning for Machine Ethics with Situation Calculus', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 203 - 215, http://dx.doi.org/10.1007/978-3-030-64984-5_16
    Preprints | 2020
    Liu D; Zhang D; Song Y; Zhang F; O'Donnell L; Huang H; Chen M; Cai W, 2020, Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-weighting, http://dx.doi.org/10.48550/arxiv.2005.02066
    Conference Papers | 2020
    Liu D; Zhang D; Song Y; Zhang F; O’Donnell L; Huang H; Chen M; Cai W, 2020, 'Unsupervised instance segmentation in microscopy images via panoptic domain adaptation and task re-weighting', in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, pp. 4242 - 4251, http://dx.doi.org/10.1109/CVPR42600.2020.00430
    Conference Papers | 2020
    Tang Z; Zhang D; Song Y; Wang H; Liu D; Zhang C; Liu S; Peng H; Cai W, 2020, '3D Conditional Adversarial Learning for Synthesizing Microscopic Neuron Image Using Skeleton-to-Neuron Translation', in Proceedings - International Symposium on Biomedical Imaging, pp. 1775 - 1779, http://dx.doi.org/10.1109/ISBI45749.2020.9098345
    Conference Papers | 2020
    Xiang T; Zhang C; Liu D; Song Y; Huang H; Cai W, 2020, 'Bio-net: Learning recurrent bi-directional connections for encoder-decoder architecture', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 74 - 84, http://dx.doi.org/10.1007/978-3-030-59710-8_8
    Preprints | 2020
    Xiang T; Zhang C; Liu D; Song Y; Huang H; Cai W, 2020, BiO-Net: Learning Recurrent Bi-directional Connections for Encoder-Decoder Architecture, http://dx.doi.org/10.48550/arxiv.2007.00243
    Conference Papers | 2020
    Zhang C; Song Y; Yao L; Cai W, 2020, 'Shape-oriented convolution neural network for point cloud analysis', in AAAI 2020 - 34th AAAI Conference on Artificial Intelligence, pp. 12773 - 12780
    Conference Papers | 2019
    Chu SW; Song Y; Zouo JJ; Cai W, 2019, 'Human Pose Estimation Using Deep Convolutional Densenet Hourglass Network with Intermediate Points Voting', in Proceedings - International Conference on Image Processing, ICIP, pp. 594 - 598, http://dx.doi.org/10.1109/ICIP.2019.8803789
    Conference Papers | 2019
    Dodballapur V; Song Y; Huang H; Chen M; Chrzanowski W; Cai W, 2019, 'Mask-driven mitosis detection in histopathology images', in Proceedings - International Symposium on Biomedical Imaging, pp. 1855 - 1859, http://dx.doi.org/10.1109/ISBI.2019.8759164
    Conference Papers | 2019
    Jia H; Song Y; Huang H; Cai W; Xia Y, 2019, 'HD-Net: Hybrid Discriminative Network for Prostate Segmentation in MR Images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Shenzhen, China, pp. 110 - 118, presented at International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2019, Shenzhen, China, 13 October 2019, http://dx.doi.org/10.1007/978-3-030-32245-8_13
    Conference Papers | 2019
    Ke J; Deng J; Lu Y; Wang D; Song Y; Zhang H, 2019, 'Assessment and Elimination of Inflammatory Cell: A Machine Learning Approach in Digital Cytology', in 2019 Digital Image Computing: Techniques and Applications, DICTA 2019, http://dx.doi.org/10.1109/DICTA47822.2019.8946065
    Conference Papers | 2019
    Liu D; Zhang D; Song Y; Zhang C; Zhang F; O'Donnell L; Cai W, 2019, 'Nuclei segmentation via a deep panoptic model with semantic feature fusion', in IJCAI International Joint Conference on Artificial Intelligence, Macao, China, pp. 861 - 868, presented at 28th International Joint Conference on Artificial Intelligence - IJCAI-19 – August 10-16 2019, Macao, China, Macao, China, 10 August 2019 - 16 August 2019, http://dx.doi.org/10.24963/ijcai.2019/121
    Conference Papers | 2019
    Wang H; Zhang D; Song Y; Liu S; Gao R; Peng H; Cai W, 2019, 'Memory and Time Efficient 3D Neuron Morphology Tracing in Large-Scale Images', in 2018 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2018, http://dx.doi.org/10.1109/DICTA.2018.8615765
    Conference Papers | 2019
    Wang H; Zhang D; Song Y; Liu S; Huang H; Chen M; Peng H; Cai W, 2019, 'Multiscale kernels for enhanced u-shaped network to improve 3D neuron tracing', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, pp. 1105 - 1113, http://dx.doi.org/10.1109/CVPRW.2019.00144
    Conference Papers | 2019
    Wang H; Zhang D; Song Y; Liu S; Wang Y; Feng D; Peng H; Cai W, 2019, 'Segmenting neuronal structure in 3d optical microscope images via knowledge distillation with teacher-student network', in Proceedings - International Symposium on Biomedical Imaging, pp. 228 - 231, http://dx.doi.org/10.1109/ISBI.2019.8759326
    Conference Papers | 2019
    Wu Y; Xia Y; Song Y; Zhang D; Liu D; Zhang C; Cai W, 2019, 'Vessel-Net: Retinal vessel segmentation under multi-path supervision', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Shenzhen, China, pp. 264 - 272, presented at MICCAI 2019 - 22nd international conference, Shenzhen, China, October 13-17, 2019, Shenzhen, China, 13 October 2019 - 17 October 2019, http://dx.doi.org/10.1007/978-3-030-32239-7_30
    Conference Papers | 2019
    Zhang C; Song Y; Liu S; Lill S; Wang C; Tang Z; You Y; Gao Y; Klistorner A; Barnett M; Cai W, 2019, 'MS-GAN: GAN-Based Semantic Segmentation of Multiple Sclerosis Lesions in Brain Magnetic Resonance Imaging', in 2018 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2018, http://dx.doi.org/10.1109/DICTA.2018.8615771
    Conference Papers | 2019
    Zhang D; Song Y; Liu D; Zhang C; Wu Y; Wang H; Zhang F; Xia Y; O’Donnell LJ; Cai W, 2019, 'Efficient 3D Depthwise and Separable Convolutions with Dilation for Brain Tumor Segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Adelaide, SA, Australia, pp. 563 - 573, presented at AI 2019 Advances in Artificial Intelligence, Adelaide, SA, Australia, 02 December 2019, http://dx.doi.org/10.1007/978-3-030-35288-2_45
    Conference Papers | 2018
    Huang Z; Ding C; Zhang L; Lee MZ; Song Y; Selvadurai H; Feng D; Zhang Y; Cai W, 2018, 'Automated Analysis of Chest Radiographs for Cystic Fibrosis Scoring', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 227 - 236, http://dx.doi.org/10.1007/978-3-030-00563-4_22
    Preprints | 2018
    Jia H; Song Y; Zhang D; Huang H; Feng D; Fulham M; Xia Y; Cai W, 2018, 3D Global Convolutional Adversarial Network\\ for Prostate MR Volume Segmentation, http://dx.doi.org/10.48550/arxiv.1807.06742
    Conference Papers | 2018
    Liu D; Zhang D; Liu S; Song Y; Jia H; Feng D; Xia Y; Cai W, 2018, 'Densely connected large kernel convolutional network for semantic membrane segmentation in microscopy images', in Proceedings - International Conference on Image Processing, ICIP, pp. 2461 - 2465, http://dx.doi.org/10.1109/ICIP.2018.8451775
    Conference Papers | 2018
    Liu D; Zhang D; Song Y; Zhang C; Huang H; Chen M; Cai W, 2018, 'Large kernel refine fusion net for neuron membrane segmentation', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, pp. 2293 - 2301, http://dx.doi.org/10.1109/CVPRW.2018.00297
    Conference Papers | 2018
    Liu D; Zhang D; Song Y; Zhang F; O’Donnell LJ; Cai W, 2018, '3D Large Kernel Anisotropic Network for Brain Tumor Segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 444 - 454, http://dx.doi.org/10.1007/978-3-030-04239-4_40
    Conference Papers | 2018
    Song Y; Chang H; Gao Y; Liu S; Zhang D; Yao J; Chrzanowski W; Cai W, 2018, 'Feature learning with component selective encoding for histopathology image classification', in Proceedings - International Symposium on Biomedical Imaging, pp. 257 - 260, http://dx.doi.org/10.1109/ISBI.2018.8363568
    Conference Papers | 2018
    Wu Y; Xia Y; Song Y; Zhang Y; Cai W, 2018, 'Multiscale network followed network model for retinal vessel segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 119 - 126, http://dx.doi.org/10.1007/978-3-030-00934-2_14
    Conference Papers | 2018
    Zhang C; Song Y; Zhang D; Liu S; Chen M; Cai W, 2018, 'Whole Slide Image Classification via Iterative Patch Labelling', in Proceedings - International Conference on Image Processing, ICIP, pp. 1408 - 1412, http://dx.doi.org/10.1109/ICIP.2018.8451551
    Conference Papers | 2018
    Zhang D; Song Y; Liu D; Jia H; Liu S; Xia Y; Huang H; Cai W, 2018, 'Panoptic segmentation with an end-to-end cell R-CNN for pathology image analysis', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 237 - 244, http://dx.doi.org/10.1007/978-3-030-00934-2_27
    Conference Papers | 2018
    Zhang D; Song Y; Liu S; Feng D; Wang Y; Cai W, 2018, 'Nuclei instance segmentation with dual contour-enhanced adversarial network', in Proceedings - International Symposium on Biomedical Imaging, pp. 409 - 412, http://dx.doi.org/10.1109/ISBI.2018.8363604
    Conference Papers | 2017
    Liu S; Zhang D; Song Y; Peng H; Cai W, 2017, 'Triple-crossing 2.5D convolutional neural network for detecting neuronal arbours in 3D microscopic images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 185 - 193, http://dx.doi.org/10.1007/978-3-319-67389-9_22
    Preprints | 2017
    Liu S; Zhang D; Song Y; Peng H; Cai W, 2017, Automated 3D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back-Tracking, http://dx.doi.org/10.1101/109892
    Conference Papers | 2017
    Song Y; Chang H; Huang H; Cai W, 2017, 'Supervised intra-embedding of fisher vectors for histopathology image classification', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 99 - 106, http://dx.doi.org/10.1007/978-3-319-66179-7_12
    Conference Papers | 2017
    Song Y; Zhang F; Li Q; Huang H; Odonnell LJ; Cai W, 2017, 'Locally-Transferred Fisher Vectors for Texture Classification', in Proceedings of the IEEE International Conference on Computer Vision, pp. 4922 - 4930, http://dx.doi.org/10.1109/ICCV.2017.526
    Conference Papers | 2017
    Song Y; Zou JJ; Chang H; Cai W, 2017, 'Adapting fisher vectors for histopathology image classification', in Proceedings - International Symposium on Biomedical Imaging, pp. 600 - 603, http://dx.doi.org/10.1109/ISBI.2017.7950592
    Conference Papers | 2017
    Tang Z; Zhang D; Liu S; Song Y; Peng H; Cai W, 2017, 'Automatic 3D Single Neuron Reconstruction with Exhaustive Tracing', in Proceedings - 2017 IEEE International Conference on Computer Vision Workshops, ICCVW 2017, pp. 126 - 133, http://dx.doi.org/10.1109/ICCVW.2017.23
    Conference Papers | 2017
    Tareef A; Song Y; Feng D; Chen M; Cai W, 2017, 'Automated multi-stage segmentation of white blood cells via optimizing color processing', in Proceedings - International Symposium on Biomedical Imaging, pp. 565 - 568, http://dx.doi.org/10.1109/ISBI.2017.7950584
    Conference Papers | 2017
    Zhang F; Kahali P; Suter Y; Norton I; Rigolo L; Savadjiev P; Song Y; Rathi Y; Cai W; Wells WM; Golby AJ; O'Donnell LJ, 2017, 'Automated connectivity-based groupwise cortical atlas generation: Application to data of neurosurgical patients with brain tumors for cortical parcellation prediction', in Proceedings - International Symposium on Biomedical Imaging, pp. 774 - 777, http://dx.doi.org/10.1109/ISBI.2017.7950633
    Conference Papers | 2017
    Zhang F; Norton I; Cai W; Song Y; Wells WM; O'Donnell LJ, 2017, 'Comparison between two white matter segmentation strategies: An investigation into white matter segmentation consistency', in Proceedings - International Symposium on Biomedical Imaging, pp. 796 - 799, http://dx.doi.org/10.1109/ISBI.2017.7950638
    Conference Papers | 2017
    Zhang F; Wu W; Ning L; McAnulty G; Waber D; Gagoski B; Sarill K; Hamoda HM; Song Y; Cai W; Rathi Y; O’Donnell LJ, 2017, 'Supra-threshold fiber cluster statistics for data-driven whole brain tractography analysis', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 556 - 565, http://dx.doi.org/10.1007/978-3-319-66182-7_64
    Conference Papers | 2016
    Liu S; Song Y; Zhang F; Feng D; Fulham M; Cai W, 2016, 'Clique identification and propagation for multimodal brain Tumor image segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 285 - 294, http://dx.doi.org/10.1007/978-3-319-47103-7_28
    Conference Papers | 2016
    Song Y; Cat W; Zhang F; Huang H; Dagan Feng D; Wang Y; Chen M, 2016, 'Texture analysis of tissue aging using global and cluster constrained local coding', in Proceedings - International Symposium on Biomedical Imaging, pp. 1229 - 1232, http://dx.doi.org/10.1109/ISBI.2016.7493488
    Conference Papers | 2016
    Song Y; Li Q; Huang H; Feng D; Chen M; Cai W, 2016, 'Histopathology image categorization with discriminative dimension reduction of fisher vectors', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 306 - 317, http://dx.doi.org/10.1007/978-3-319-46604-0_22
    Conference Papers | 2016
    Tareef A; Song Y; Cai W; Wang Y; Feng DD; Chen M, 2016, 'Automatic nuclei and cytoplasm segmentation of leukocytes with color and texture-based image enhancement', in Proceedings - International Symposium on Biomedical Imaging, pp. 935 - 938, http://dx.doi.org/10.1109/ISBI.2016.7493418
    Conference Papers | 2016
    Zhang F; Savadjiev P; Cai W; Song Y; Verma R; Westin CF; O'Donnell LJ, 2016, 'Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging', in Proceedings - International Symposium on Biomedical Imaging, pp. 564 - 567, http://dx.doi.org/10.1109/ISBI.2016.7493331
    Conference Papers | 2015
    Song Y; Cai W; Li Q; Zhang F; Feng DD; Huang H, 2015, 'Fusing subcategory probabilities for texture classification', in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, pp. 4409 - 4417, http://dx.doi.org/10.1109/CVPR.2015.7299070
    Conference Papers | 2015
    Song Y; Cai W; Zhang F; Huang H; Zhou Y; Dagan Feng D, 2015, 'Bone texture characterization with fisher encoding of local descriptors', in Proceedings - International Symposium on Biomedical Imaging, pp. 5 - 8, http://dx.doi.org/10.1109/ISBI.2015.7163803
    Conference Papers | 2015
    Tareef A; Song Y; Cai W; Huang H; Wang Y; Feng D; Chen M, 2015, 'Learning shape-driven segmentation based on neural network and sparse reconstruction toward automated cell analysis of cervical smears', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 390 - 400, http://dx.doi.org/10.1007/978-3-319-26532-2_43
    Conference Papers | 2015
    Tareef A; Song Y; Lee M-Z; Feng DD; Chen M; Cai W, 2015, 'Morphological Filtering and Hierarchical Deformation for Partially Overlapping Cell Segmentation', in 2015 INTERNATIONAL CONFERENCE ON DIGITAL IMAGE COMPUTING: TECHNIQUES AND APPLICATIONS (DICTA), IEEE, AUSTRALIA, Adelaide, pp. 527 - 533, presented at International Conference on Digital Image Computing: Techniques and Applications, AUSTRALIA, Adelaide, 23 November 2015 - 25 November 2015, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000380485600074&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
    Conference Papers | 2015
    Tareef A; Song Y; Lee MZ; Feng DD; Chen M; Cai W, 2015, 'Morphological Filtering and Hierarchical Deformation for Partially Overlapping Cell Segmentation', in 2015 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2015, http://dx.doi.org/10.1109/DICTA.2015.7371285
    Conference Papers | 2015
    Zhang F; Cai W; Song Y; Young P; Traini D; Morgan L; Ong HX; Buddle L; Feng D, 2015, 'Beating cilia identification in fluorescence microscope images for accurate CBF measurement', in Proceedings - International Conference on Image Processing, ICIP, pp. 4496 - 4500, http://dx.doi.org/10.1109/ICIP.2015.7351657
    Conference Papers | 2015
    Zhang F; Song Y; Cai W; Depeursinge A; Müller H, 2015, 'USYD/HES-SO in the VISCERAL retrieval benchmark', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 139 - 143, http://dx.doi.org/10.1007/978-3-319-24471-6_13
    Conference Papers | 2015
    Zhang F; Song Y; Cai W; Hauptmann AG; Liu S; Liu S; Feng DD; Chen M, 2015, 'Ranking-based vocabulary pruning in bag-of-features for image retrieval', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 436 - 445, http://dx.doi.org/10.1007/978-3-319-14803-8_34
    Conference Papers | 2015
    Zhang F; Song Y; Liu S; Pujol S; Kikinis R; Feng D; Cai W, 2015, 'Latent semantic association for medical image retrieval', in 2014 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2014, http://dx.doi.org/10.1109/DICTA.2014.7008114
    Conference Papers | 2015
    Zhang F; Song Y; Liu S; Young P; Traini D; Morgan L; Ong HX; Buddle L; Liu S; Feng D; Cai W, 2015, 'Motion representation of ciliated cell images with contour-alignment for automated CBF estimation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 300 - 307, http://dx.doi.org/10.1007/978-3-319-24574-4_36
    Conference Papers | 2014
    Cai W; Liu S; Song Y; Pujol S; Kikinis R; Feng D, 2014, 'A 3D difference-of-Gaussian-based lesion detector for brain PET', in 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI), IEEE, presented at 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI 2014), 29 April 2014 - 02 May 2014, http://dx.doi.org/10.1109/isbi.2014.6867961
    Conference Papers | 2014
    Cai W; Zhang F; Song Y; Liu S; Wen L; Eberl S; Fulham M; Feng D, 2014, 'Automated feedback extraction for medical imaging retrieval', in 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, pp. 907 - 910, http://dx.doi.org/10.1109/isbi.2014.6868018
    Conference Papers | 2014
    Ng G; Song Y; Cai W; Zhou Y; Liu S; Dagan Feng D, 2014, 'Hierarchical and binary spatial descriptors for lung nodule image retrieval', in 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014, pp. 6463 - 6466, http://dx.doi.org/10.1109/EMBC.2014.6945108
    Conference Papers | 2014
    Song Y; Cai W; Huang H; Zhou Y; Feng DD; Chen M, 2014, 'Large margin aggregation of local estimates for medical image classification', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 196 - 203, http://dx.doi.org/10.1007/978-3-319-10470-6_25
    Conference Papers | 2014
    Song Y; Cai W; Huang H; Zhou Y; Wang Y; Feng DD, 2014, 'BOOSTED MULTIFOLD SPARSE REPRESENTATION WITH APPLICATION TO ILD CLASSIFICATION', in 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI), IEEE, PEOPLES R CHINA, Beijing, pp. 1023 - 1026, presented at 11th IEEE International Symposium on Biomedical Imaging (ISBI), PEOPLES R CHINA, Beijing, 29 April 2014 - 02 May 2014, http://dx.doi.org/10.1109/isbi.2014.6868047
    Conference Papers | 2014
    Tareef A; Song Y; Cai W; Feng DD; Chen M, 2014, 'Automated three-stage nucleus and cytoplasm segmentation of overlapping cells', in 2014 13th International Conference on Control Automation Robotics and Vision, ICARCV 2014, pp. 865 - 870, http://dx.doi.org/10.1109/ICARCV.2014.7064418
    Conference Papers | 2014
    Zhang F; Cai W; Song Y; Young P; Traini D; Morgan L; Ong HX; Buddle L; Feng D, 2014, 'Image-based ciliary beating frequency estimation for therapeutic assessment on defective mucociliary clearance diseases', in 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, pp. 193 - 196, http://dx.doi.org/10.1109/isbi.2014.6867842
    Conference Papers | 2014
    Zhang F; Song Y; Cai W; Zhou Y; Fulham M; Eberl S; Shan S; Feng D, 2014, 'A ranking-based lung nodule image classification method using unlabeled image knowledge', in 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, pp. 1356 - 1359, http://dx.doi.org/10.1109/isbi.2014.6868129
    Conference Papers | 2013
    2013, 'Similarity guided feature labeling for lesion detection.', in Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 284 - 291
    Conference Papers | 2013
    Lee MZ; Cai W; Song Y; Selvadurai H; Feng DD, 2013, 'Fully automated scoring of chest radiographs in cystic fibrosis', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 3965 - 3968, http://dx.doi.org/10.1109/EMBC.2013.6610413
    Conference Papers | 2013
    Liu S; Cai W; Song Y; Pujol S; Kikinis R; Wen L; Feng DD, 2013, 'Localized Sparse Code Gradient in Alzheimer's disease staging', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 5398 - 5401, http://dx.doi.org/10.1109/EMBC.2013.6610769
    Conference Papers | 2013
    Liu S; Song Y; Cai W; Pujol S; Kikinis R; Wang X; Feng D, 2013, 'Multifold Bayesian kernelization in Alzheimer's diagnosis', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 303 - 310, http://dx.doi.org/10.1007/978-3-642-40763-5_38
    Conference Papers | 2013
    Liu S; Song Y; Cai W; Pujol S; Kikinis R; Wang X; Feng D, 2013, 'Multifold Bayesian kernelization in Alzheimer's diagnosis.', in Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 303 - 310
    Conference Papers | 2013
    Liu S; Zhang L; Cai W; Song Y; Wang Z; Wen L; Feng DD, 2013, 'A supervised multiview spectral embedding method for neuroimaging classification', in 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings, pp. 601 - 605, http://dx.doi.org/10.1109/ICIP.2013.6738124
    Conference Papers | 2013
    Lu S; Wang Z; Song Y; Mei T; Feng DD, 2013, 'A bag-of-importance model for video summarization', in Electronic Proceedings of the 2013 IEEE International Conference on Multimedia and Expo Workshops, ICMEW 2013, http://dx.doi.org/10.1109/ICMEW.2013.6618454
    Conference Papers | 2013
    Song Y; Cai W; Feng DD; Chen M, 2013, 'Cell nuclei segmentation in fluorescence microscopy images using inter- and intra-region discriminative information', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 6087 - 6090, http://dx.doi.org/10.1109/EMBC.2013.6610941
    Conference Papers | 2013
    Song Y; Cai W; Huang H; Wang X; Eberl S; Fulham M; Feng D, 2013, 'Similarity guided feature labeling for lesion detection', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 284 - 291, http://dx.doi.org/10.1007/978-3-642-40811-3_36
    Conference Papers | 2013
    Song Y; Cai W; Huang H; Wang Y; Feng DD, 2013, 'Context enhanced graphical model for object localization in medical images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 194 - 205, http://dx.doi.org/10.1007/978-3-642-36620-8_19
    Conference Papers | 2013
    Song Y; Cai W; Huh S; Chen M; Kanade T; Zhou Y; Feng D, 2013, 'Discriminative data transform for image feature extraction and classification', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 452 - 459, http://dx.doi.org/10.1007/978-3-642-40763-5_56
    Conference Papers | 2013
    Song Y; Cai W; Huh S; Chen M; Kanade T; Zhou Y; Feng D, 2013, 'Discriminative data transform for image feature extraction and classification', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 452 - 459, http://dx.doi.org/10.1007/978-3-642-40763-5_56
    Conference Papers | 2013
    Song Y; Cai W; Zhou Y; Wen L; Feng DD, 2013, 'Pathology-centric medical image retrieval with hierarchical contextual spatial descriptor', in Proceedings - International Symposium on Biomedical Imaging, pp. 198 - 201, http://dx.doi.org/10.1109/ISBI.2013.6556446
    Conference Papers | 2013
    Zhang F; Cai W; Song Y; Lee MZ; Shan S; Dagan D, 2013, 'Overlapping node discovery for improving classification of lung nodules', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 5461 - 5464, http://dx.doi.org/10.1109/EMBC.2013.6610785
    Conference Papers | 2013
    Zhang F; Song Y; Cai W; Zhou Y; Shan S; Feng D, 2013, 'Context curves for classification of lung nodule images', in 2013 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2013, http://dx.doi.org/10.1109/DICTA.2013.6691494
    Conference Papers | 2013
    Zhang L; Liu S; Wang Z; Cai W; Song Y; Feng DD, 2013, 'Graph cuts based relevance feedback in image retrieval', in 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings, pp. 4358 - 4362, http://dx.doi.org/10.1109/ICIP.2013.6738898
    Conference Papers | 2012
    Cai W; Song Y; Feng DD, 2012, 'Regression and classification based distance metric learning for medical image retrieval', in Proceedings - International Symposium on Biomedical Imaging, pp. 1775 - 1778, http://dx.doi.org/10.1109/ISBI.2012.6235925
    Conference Papers | 2012
    Song Y; Cai W; Feng DD, 2012, 'Global context inference for adaptive abnormality detection in PET-CT images', in Proceedings - International Symposium on Biomedical Imaging, pp. 482 - 485, http://dx.doi.org/10.1109/ISBI.2012.6235589
    Conference Papers | 2012
    Song Y; Cai W; Feng DD, 2012, 'Microscopic image segmentation with two-level enhancement of feature discriminability', in 2012 International Conference on Digital Image Computing Techniques and Applications, DICTA 2012, http://dx.doi.org/10.1109/DICTA.2012.6411682
    Conference Papers | 2012
    Song Y; Cai W; Huang H; Wang Y; Feng DD, 2012, 'Object localization in medical images based on graphical model with contrast and interest-region terms', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, pp. 1 - 7, http://dx.doi.org/10.1109/CVPRW.2012.6239240
    Conference Papers | 2012
    Song Y; Cai W; Wang Y; Feng DD, 2012, 'Location classification of lung nodules with optimized graph construction', in Proceedings - International Symposium on Biomedical Imaging, pp. 1439 - 1442, http://dx.doi.org/10.1109/ISBI.2012.6235841
    Conference Papers | 2012
    Song Y; Cai W; Zhou Y; Feng D, 2012, 'Thoracic abnormality detection with data adaptive structure estimation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 74 - 81, http://dx.doi.org/10.1007/978-3-642-33415-3_10
    Conference Papers | 2011
    Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2011, 'Discriminative pathological context detection in thoracic images based on multi-level inference', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 191 - 198, http://dx.doi.org/10.1007/978-3-642-23626-6_24
    Conference Papers | 2011
    Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2011, 'Discriminative pathological context detection in thoracic images based on multi-level inference', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 191 - 198, http://dx.doi.org/10.1007/978-3-642-23626-6_24
    Conference Papers | 2011
    Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2011, 'Region and learning based retrieval for multi-modality medical images', in Proceedings of the 8th IASTED International Conference on Biomedical Engineering, Biomed 2011, pp. 343 - 350, http://dx.doi.org/10.2316/P.2011.723-063
    Conference Papers | 2011
    Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2011, 'Thoracic image case retrieval with spatial and contextual information', in Proceedings - International Symposium on Biomedical Imaging, pp. 1885 - 1888, http://dx.doi.org/10.1109/ISBI.2011.5872776
    Conference Papers | 2011
    Song Y; Cai W; Eberl S; Fulham MJ; Feng DD, 2011, 'Thoracic image matching with appearance and spatial distribution', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 4469 - 4472, http://dx.doi.org/10.1109/IEMBS.2011.6091108
    Conference Papers | 2011
    Song Y; Cai W; Eberl S; Fulham MJ; Feng DD, 2011, 'Thoracic image matching with appearance and spatial distribution.', in Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, pp. 4469 - 4472, http://dx.doi.org/10.1109/IEMBS.2011.6091108
    Conference Papers | 2011
    Song Y; Cai W; Feng DD, 2011, 'Hierarchical spatial matching for medical image retrieval', in MM'11 - Proceedings of the 2011 ACM Multimedia Conference and Co-Located Workshops - 2011 ACM International Workshop on Medical Multimedia Analysis and Retrieval, MMAR'11, pp. 1 - 6, http://dx.doi.org/10.1145/2072545.2072547
    Conference Papers | 2010
    Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2010, 'A content-based image retrieval framework for multi-modality lung images', in Proceedings - IEEE Symposium on Computer-Based Medical Systems, pp. 285 - 290, http://dx.doi.org/10.1109/CBMS.2010.6042657
    Conference Papers | 2010
    Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2010, 'Structure-adaptive feature extraction and representation for multi-modality lung images retrieval', in Proceedings - 2010 Digital Image Computing: Techniques and Applications, DICTA 2010, pp. 152 - 157, http://dx.doi.org/10.1109/DICTA.2010.37

Selected awards: 

  • 2021      Faculty of Engineering Research Excellence Award, UNSW
  • 2021      Impact Scholar, Google
  • 2020      Scientia Fellowship, UNSW
  • 2019      ARC Future Fellowship
  • 2017      Dean’s Research Award, University of Sydney
  • 2015      ARC Discovery Early Career Researcher Award (DECRA)
  • 2013      Google Publication Prize

My Teaching

  • COMP9517 - Computer Vision 
  • COMP9417 - Machine Learning and Data Mining
  • COMP9491 - Applied Artificial Intelligence
  • Vertically Integrated Project - AI 4 Everyone
  • Supervision of Honours thesis studies and Master's research project studies